Introduction

The use of high-throughput RNA sequencing to predict dynamic operon structures in prokaryotic genomes has recently gained popularity in bioinformatics. We provide the R implementation of a novel method that uses transcriptomic features extracted from RNA-seq transcriptome profiles to develop ensemble classifiers for condition-dependent operon predictions. The CONDOP package provides a deeper insight into RNA-seq data analysis and allows scientists to highlight the operon organization in the context of transcriptional regulation with a few lines of code.CONDOP is implemented in R and is freely available at CRAN.vittorio.fortino@helsinki.fiSupplementary information: Supplementary data are available at Bioinformatics online.

Publications

  1. CONDOP: an R package for CONdition-Dependent Operon Predictions.
    Cite this
    Fortino V, Tagliaferri R, Greco D, 2016-10-01 - Bioinformatics (Oxford, England)

Credits

  1. Vittorio Fortino
    Developer

    Institute of Biotechnology, University of Helsinki, Finland

  2. Roberto Tagliaferri
    Developer

    NeuRoNe Lab, DISA-MIS, Italy

  3. Dario Greco
    Investigator

    Institute of Biotechnology, University of Helsinki, Finland

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Summary
AccessionBT000972
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesR
User InterfaceTerminal Command Line
Download Count0
Country/RegionFinland
Submitted ByDario Greco