Introduction

Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics.Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web CONTACT: bjgrant@umich.edu or lars.skjarven@uib.no.

Publications

  1. Online interactive analysis of protein structure ensembles with Bio3D-web.
    Cite this
    Skjærven L, Jariwala S, Yao XQ, Grant BJ, 2016-11-01 - Bioinformatics (Oxford, England)
  2. Integrating protein structural dynamics and evolutionary analysis with Bio3D.
    Cite this
    Skjærven L, Yao XQ, Scarabelli G, Grant BJ, 2014-01-01 - BMC bioinformatics
  3. Bio3d: an R package for the comparative analysis of protein structures.
    Cite this
    Grant BJ, Rodrigues AP, ElSawy KM, McCammon JA, Caves LS, 2006-11-01 - Bioinformatics (Oxford, England)

Credits

  1. Lars Skjærven
    Developer

    Department of Biomedicine, University of Bergen, Norway

  2. Shashank Jariwala
    Developer

    Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, United States of America

  3. Xin-Qiu Yao
    Developer

    Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, United States of America

  4. Barry J Grant
    Investigator

    Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, United States of America

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Summary
AccessionBT001611
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesR
User InterfaceTerminal Command Line
Download Count0
Country/RegionUnited States of America
Submitted ByBarry J Grant