Introduction

Tag density plots are very important to intuitively reveal biological phenomena from capture-based sequencing data by visualizing the normalized read depth in a region.We have developed iTagPlot to compute tag density across functional features in parallel using multicores and a grid engine and to interactively explore it in a graphical user interface. It allows us to stratify features by defining groups based on biological function and measurement, summary statistics and unsupervised clustering.http://sourceforge.net/projects/itagplot/.

Publications

  1. iTagPlot: an accurate computation and interactive drawing tool for tag density plot.
    Cite this
    Kim SH, Ezenwoye O, Cho HG, Robertson KD, Choi JH, 2015-07-01 - Bioinformatics (Oxford, England)

Credits

  1. Sung-Hwan Kim
    Developer

    School of Computer Science and Engineering, Pusan National University, Korea (Republic of)

  2. Onyeka Ezenwoye
    Developer

    Hull College of Business, Georgia Regents University, United States of America

  3. Hwan-Gue Cho
    Developer

    School of Computer Science and Engineering, Pusan National University, Korea (Republic of)

  4. Keith D Robertson
    Developer

    Department of Molecular Pharmacology and Experimental Therapeutics, Center for Individualized Medicine, United States of America

  5. Jeong-Hyeon Choi
    Investigator

    Cancer Center and Department of Biostatistics and Epidemiology, Medical College of Georgia, United States of America

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Summary
AccessionBT002020
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesPerl
User InterfaceTerminal Command Line
Download Count0
Country/RegionUnited States of America
Submitted ByJeong-Hyeon Choi