Introduction

TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM.

Publications

  1. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
    Cite this
    Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J, 2003-03-01 - Bioinformatics (Oxford, England)

Credits

  1. Geo Pertea
    Developer

  2. Xiaoqiu Huang
    Developer

  3. Feng Liang
    Developer

  4. Valentin Antonescu
    Developer

  5. Razvan Sultana
    Developer

  6. Svetlana Karamycheva
    Developer

  7. Yuandan Lee
    Developer

  8. Joseph White
    Developer

  9. Foo Cheung
    Developer

  10. Babak Parvizi
    Developer

  11. Jennifer Tsai
    Developer

  12. John Quackenbush
    Investigator

Community Ratings

UsabilityEfficiencyReliabilityRated By
0 user
Sign in to rate
Summary
AccessionBT002302
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesC, C++, Perl
User InterfaceTerminal Command Line
Download Count0
Submitted ByJohn Quackenbush