Introduction

PermutMatrix is a work space designed to graphically explore gene expression data. It relies on the graphical approach introduced by Eisen and also offers several methods for the optimal reorganization of rows and columns of a numerical dataset. For example, several methods are proposed for optimal reorganization of the leaves of a hierarchical clustering tree, along with several seriation or unidimensional scaling methods that do not require any preliminary hierarchical clustering. This program, developed for MS Windows, with MS-Visual C++, has a clear and efficient graphical interface. Large datasets can be thoroughly and quickly analyzed.

Publications

  1. PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order.
    Cite this
    Caraux G, Pinloche S, 2005-04-01 - Bioinformatics (Oxford, England)

Credits

  1. Gilles Caraux
    Developer

  2. Sylvie Pinloche
    Investigator

Community Ratings

UsabilityEfficiencyReliabilityRated By
0 user
Sign in to rate
Summary
AccessionBT005623
Tool TypeApplication
Category
PlatformsWindows
TechnologiesC++
User InterfaceTerminal Command Line
Download Count0
Submitted BySylvie Pinloche