Introduction

UNLABELLED: We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects. AVAILABILITY: The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/ CONTACT: jkissing@uga.edu.

Publications

  1. SynView: a GBrowse-compatible approach to visualizing comparative genome data.
    Cite this
    Wang H, Su Y, Mackey AJ, Kraemer ET, Kissinger JC, 2006-09-01 - Bioinformatics (Oxford, England)

Credits

  1. Haiming Wang
    Developer

  2. Yanqi Su
    Developer

  3. Aaron J Mackey
    Developer

  4. Eileen T Kraemer
    Developer

  5. Jessica C Kissinger
    Investigator

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Summary
AccessionBT006421
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted ByJessica C Kissinger