Introduction

The R/Bioconductor package girafe facilitates the functional exploration of alignments of sequence reads from next-generation sequencing data to a genome. It allows users to investigate the genomic intervals together with the aligned reads and to work with, visualise and export these intervals. Moreover, the package operates within and extends the ever-growing Bioconductor framework and thus enables users to leverage a multitude of methods for their data in order to answer specific research questions.The R package girafe is available from the Bioconductor web site: http://www.bioconductor.org/packages/release/bioc/html/girafe.html. An extensive vignette and the Bioconductor mailing lists provide additional documentation and help for using the package.

Publications

  1. Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
    Cite this
    Toedling J, Ciaudo C, Voinnet O, Heard E, Barillot E, 2010-11-01 - Bioinformatics (Oxford, England)

Credits

  1. Joern Toedling
    Developer

    Institut Curie, 26 rue d'Ulm

  2. Constance Ciaudo
    Developer

  3. Olivier Voinnet
    Developer

  4. Edith Heard
    Developer

  5. Emmanuel Barillot
    Investigator

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Summary
AccessionBT006493
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesR
User InterfaceTerminal Command Line
Download Count0
Submitted ByEmmanuel Barillot