GATK UnifiedGenotyper

Introduction

Publications

1. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

   Cite this

   Van der Auwera GA, Carneiro MO, Hartl C, Poplin R, Del Angel G, Levy-Moonshine A, Jordan T, Shakir K, Roazen D, Thibault J, Banks E, Garimella KV, Altshuler D, Gabriel S, DePristo MA, 2013-01-01 - Current protocols in bioinformatics

2. A framework for variation discovery and genotyping using next-generation DNA sequencing data.

   Cite this

   DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ, 2011-05-01 - Nature genetics

3. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

   Cite this

   McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA, 2010-09-01 - Genome research

Credits

1. Geraldine A Van der Auwera
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

2. Mauricio O Carneiro
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

3. Chris Hartl
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

4. Ryan Poplin
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

5. Guillermo del Angel
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

6. Ami Levy-Moonshine
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

7. Tadeusz Jordan
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

8. Khalid Shakir
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

9. David Roazen
   Developer

   Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

10. Joel Thibault
    Developer

    Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

11. Eric Banks
    Developer

    Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

12. Kiran V Garimella
    Developer

    Wellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom of Great Britain and Northern Ireland

13. David Altshuler
    Developer

    Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

14. Stacey Gabriel
    Developer

    Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

15. Mark A DePristo
    Investigator

    Genome Sequencing and Analysis Group, Broad Institute of MIT and Harvard

Community Ratings