Introduction

SUMMARY: SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups. AVAILABILITY: Source code is freely available under GPLv3 at https://sourceforge.net/projects/shap. CONTACT: matt.demaere@unsw.edu.au; r.cavicchioli@unsw.edu.au.

Publications

  1. Simple high-throughput annotation pipeline (SHAP).
    Cite this
    DeMaere MZ, Lauro FM, Thomas T, Yau S, Cavicchioli R, 2011-09-01 - Bioinformatics (Oxford, England)

Credits

  1. Matthew Z DeMaere
    Developer

  2. Federico M Lauro
    Developer

  3. Torsten Thomas
    Developer

  4. Sheree Yau
    Developer

  5. Ricardo Cavicchioli
    Investigator

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Summary
AccessionBT006591
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted ByRicardo Cavicchioli