Introduction

SUMMARY: Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames. AVAILABILITY: http://snakemake.googlecode.com. CONTACT: johannes.koester@uni-due.de.

Publications

  1. Snakemake--a scalable bioinformatics workflow engine.
    Cite this
    Köster J, Rahmann S, 2012-10-01 - Bioinformatics (Oxford, England)

Credits

  1. Johannes Köster
    Developer

  2. Sven Rahmann
    Investigator

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Summary
AccessionBT006746
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted BySven Rahmann