Introduction

The BioPerl toolkit provides a library of hundreds of routines for processing sequence, annotation, alignment, and sequence analysis reports. It often serves as a bridge between different computational biology applications assisting the user to construct analysis pipelines. This chapter illustrates how BioPerl facilitates tasks such as writing scripts summarizing information from BLAST reports or extracting key annotation details from a GenBank sequence record.

Publications

  1. An Introduction to BioPerl.
    Cite this
    Stajich JE, 2007-01-01 - Methods in molecular biology (Clifton, N.J.)
  2. The Bioperl toolkit: Perl modules for the life sciences.
    Cite this
    Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E, 2002-10-01 - Genome research

Credits

  1. Jason E Stajich
    Investigator

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Summary
AccessionBT006856
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesPerl
User InterfaceTerminal Command Line
Download Count0
Submitted ByJason E Stajich