Introduction

DIYABC is a software package for a comprehensive analysis of population history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 implements a number of new features and analytical methods. It allows (i) the analysis of single nucleotide polymorphism data at large number of loci, apart from microsatellite and DNA sequence data, (ii) efficient Bayesian model choice using linear discriminant analysis on summary statistics and (iii) the serial launching of multiple post-processing analyses. DIYABC v2.0 also includes a user-friendly graphical interface with various new options. It can be run on three operating systems: GNU/Linux, Microsoft Windows and Apple Os X.Freely available with a detailed notice document and example projects to academic users at http://www1.montpellier.inra.fr/CBGP/diyabc CONTACT: estoup@supagro.inra.fr Supplementary information: Supplementary data are available at Bioinformatics online.

Publications

  1. DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.
    Cite this
    Cornuet JM, Pudlo P, Veyssier J, Dehne-Garcia A, Gautier M, Leblois R, Marin JM, Estoup A, 2014-04-01 - Bioinformatics (Oxford, England)

Credits

  1. Jean-Marie Cornuet
    Developer

    INRA, UMR1062 CBGP, France

  2. Pierre Pudlo
    Developer

    INRA, UMR1062 CBGP, France

  3. Julien Veyssier
    Developer

    INRA, UMR1062 CBGP, France

  4. Alexandre Dehne-Garcia
    Developer

    INRA, UMR1062 CBGP, France

  5. Mathieu Gautier
    Developer

    INRA, UMR1062 CBGP, France

  6. Raphaël Leblois
    Developer

    INRA, UMR1062 CBGP, France

  7. Jean-Michel Marin
    Developer

    INRA, UMR1062 CBGP, France

  8. Arnaud Estoup
    Investigator

    INRA, UMR1062 CBGP, France

Community Ratings

UsabilityEfficiencyReliabilityRated By
0 user
Sign in to rate
Summary
AccessionBT006958
Tool TypeApplication
Category
PlatformsLinux/Unix
Technologies
User InterfaceTerminal Command Line
Download Count0
Country/RegionFrance
Submitted ByArnaud Estoup