CCCbank CCCbank: an integrated computational pipeline for CCC inference by flexibly combining inference methods and prior databases

To facilitate practical applications of CCC inference tools, we developed an integrated computational pipeline, CCCbank, that enables flexible combinations between 16 LR inference methods and 13 LR databases. Via CCCbank, each method can be equipped with one or more LR databases or any other user-defined databases. CCCbank uses Seurat object of scRNA-seq data as input for CCC inference. The output of CCCbank includes inferred LR pairs and their scores, which can be used for further analysis or visualization.