Cardiovascular Disease Atlas
Data release 1.0
| Symbol | CVD Atlas ID | Species | Gene ID | Biotype | Chr | Start | End |
|---|---|---|---|---|---|---|---|
| BCL3 | CVDG000025 | Homo sapiens | ENSG00000069399 | Protein coding | 19 | 44747705 | 44760044 |
| Disease or trait | Score |
|---|---|
| Low density lipoprotein cholesterol measurement | 0.88075 |
| Total cholesterol measurement | 0.71949 |
| High density lipoprotein cholesterol measurement | 0.7057 |
| Very low density lipoprotein cholesterol measurement | 0.69721 |
| Triglyceride measurement | 0.67527 |
| GO ID | GO term | Category |
|---|
| Tissue/cell type | Disease | Condition 1 | Condition 2 | Alteration | log2FC | P value | Adjusted P value | Method | PMID |
|---|---|---|---|---|---|---|---|---|---|
| Blood | Intermediate coronary lesion | Intermediate coronary lesion | Control | Up | 1.97 | - | 2.62e-2 | RNA-seq | 26038090 |
| Dataset | Tissue/cell type | Reported disease | Mapped disease | log2FC | P value | Adjusted P value | Method | GEO accession |
|---|---|---|---|---|---|---|---|---|
| CVDS000011 | Heart left ventricle | Ischemic cardiomyopathy | Ischemic cardiomyopathy | 2.43 | 1.62e-6 | 1.97e-5 | RNA-seq | GSE116250 |
| CVDS000048 | Neutrophil | Behcet¡¯s disease | Behcet syndrome | 1.24 | 1.53e-6 | 8.29e-5 | RNA-seq | GSE205867 |
| CVDS000073 | Intracranial artery | Intracranial aneurysm | Intracranial aneurysm | 1.26 | 9.16e-4 | 9.81e-3 | Microarray | GSE75436 |
| CVDS000076 | Wall of left ventricle | Chagas cardiomyopathy | Chagas cardiomyopathy | 5.11 | 5.33e-7 | 9.06e-5 | Microarray | GSE84796 |
| CVDS000524 | Cerebellum | Ataxia Telangiectasia | Ataxia telangiectasia | 2.99 | 4.62e-4 | 4.42e-3 | Microarray | GSE61019 |
| CVDS000598 | Mononuclear cell | Primary multiple intracranial aneurysms | Intracranial aneurysm | -6.74 | 1.94e-4 | 3.98e-2 | RNA-seq | GSE159631 |
| CVDS000622 | Blood | Kawasaki Disease | Kawasaki disease | -9.32 | 5.75e-4 | 2.35e-3 | Microarray | GSE68004 |
| Reported disease | Mapped disease | RNADisease score | PMID | Gene link |
|---|---|---|---|---|
| No data available in table | ||||
| Reported disease/trait | Mapped trait | Tissue | Effect size | P value | Method | Publication | PMID | Gene link |
|---|---|---|---|---|---|---|---|---|
| Cholesterol Measurement | Hypercholesterolemia | Liver | - | 4.45e-05 | Probabilistic Transcriptome-Wide Association(PTWAS) | TWASP000141 | 32912253 | TWAS Atlas |
| Low Density Lipoprotein | Low density lipoprotein cholesterol measurement | Liver | -0.0675 | 1.27e-08 | PrediXcan | TWASP000077 | 33020666 | TWAS Atlas |
| Reported disease | Mapped disease | Category | Description | Publication |
|---|---|---|---|---|
| No data available in table | ||||
| Reported disease | Mapped disease | Species | Description | Publication |
|---|---|---|---|---|
| No data available in table | ||||
| Variant | Reported disease/trait | Mapped disease/trait | Beta | Standard error | P value | Odds ratio | Ancestry | Dataset | Link |
|---|
| Reported disease/trait | Mapped disease/trait | Tissue | Best coloc SNP | GWAS risk SNP | SNP.PP.H4 | PP.H4.abf | Ancestry | Dataset |
|---|
| Variant | Reported disease | Mapped disease | Description | PMID |
|---|---|---|---|---|
| No data available in table | ||||
| Variant | Disease | Pre miRNA | Region | Mature miRNA | △G | Exp | PMID |
|---|---|---|---|---|---|---|---|
| No data available in table | |||||||
| Reported disease | Gene | Category | Description | Publication |
|---|---|---|---|---|
| No data available in table | ||||
| SNP | Reported disease | Mapped disease | Description | PMID |
|---|---|---|---|---|
| No data available in table | ||||
| Name | Delta beta | P value | Adjusted P value | Reported disease | Mapped disease | Dataset |
|---|---|---|---|---|---|---|
| No data available in table | ||||||
| Name | Relation to gene | Delta beta | P value | Adjusted P value | Tissue | Reported disease | Mapped disease | Condition 1 | Condition 2 | PMID |
|---|---|---|---|---|---|---|---|---|---|---|
| No data available in table | ||||||||||
| Reported disease | Mapped disease | Category | Description | Publication |
|---|---|---|---|---|
| No data available in table | ||||
| Reported disease | Mapped disease | Species | Description | Publication |
|---|---|---|---|---|
| No data available in table | ||||
| UniProt ID | Reported disease | Mapped disease | Average log2FC | P value | Dataset |
|---|---|---|---|---|---|
| No data available in table | |||||
| Chemical name | Chemical ID | Reported disease | Mapped disease | Inference score | #PMIDs | Gene link |
|---|