Motif search
Identification of conserved sequence motifs and domains.
SMART search
- Search SMART to find conserved domain for
PPF1_PEA
- Search SMART to find conserved domain for the Arabidopsis RNA-binding
protein
AT1G60000
- Search SMART to find conserved domain for the Arabidopsis transcription
factor
AT1G27370
MEME search
- Search MEME to find conserved domain for the protein sequence of 15
Arabidopsis SBP transcription factors
15ATSBP
HMM search
- Use HMMER hmmbuild to build HMM model for 15 SBP DNA binding domains
15ATSBPD
- Use HMMER hmmcalibrate to adjust the above HMM model
15ATSBPD
- Use HMMER hmmsearch using the HMM model (atsbpd.hmm) to identify SBP
DNA binding domains against maize transcription factors using the above
HMM model.
- Build HMM model for 15 SBP DNA binding domains
15ATSBPD
Sequence logo
- Create a sequence logo for the SNPs of 20 SARS coronaviruses
20 SARS
- Create a sequence logo for the the DNA binding domain of 15 Arabidopsis
SBP proteins
15ATSBPD