- Scientific Name
- Sphingomonas olei
- Common Names
- -
- Bioproject
- PRJCA008167
- Biosample
- SAMC586198
- Accession No.
- GWHBHLZ00000000
- GWH reannotation accession
- GWHRA_BHLZ00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences
- Contact
- Yang Liu, liuyang21@nieer.ac.cn
- Sequence author(s)
- Yang Liu
- Released Date
- 2022-02-07
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo Version 2.04
- Sequencing & coverage
- Illumina HiSeq 2000 12.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBHLZ00000000 | GWHRA_BHLZ00000000.1 | Sphingomonas olei | Draft genome in scaffold level | 2022-02-07 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,914,763 |
| GC content | 66.00% |
| Scaffold sequence No. | 86 |
| Maximum scaffold sequence length (bp) | 1,270,574 |
| Minimum scaffold sequence length (bp) | 1,089 |
| Average scaffold sequence length (bp) | 45,521 |
| Scaffold N50 (bp) | 169,533 |
| Scaffold N90 (bp) | 28,752 |
Statistics of Genome Assembly
| Genome size (bp) | 3,914,763 |
| GC content | 66.00% |
| Scaffold sequence No. | 86 |
| Maximum scaffold sequence length (bp) | 1,270,574 |
| Minimum scaffold sequence length (bp) | 1,089 |
| Average scaffold sequence length (bp) | 45,521 |
| Scaffold N50 (bp) | 169,533 |
| Scaffold N90 (bp) | 28,752 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 3,743 | 48 | 4 | 56 | 98 | 3,949 |