- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA011169
- Biosample
- SAMC849827
- Accession No.
- GWHBKAV00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR555148
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- Rice research institute, Shenyang Agricultural University
- Contact
- Quan Xu, kobexu34@syau.edu.cn
- Sequence author(s)
- Quan Xu
- Released Date
- 2022-09-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Necat 20200119_Linux-amd64
Pilon v1.4.20
Racon v1.24
Lachesis version 2013 - Sequencing & coverage
- Nanopore gridION 120.0
illumina Novaseq 6000 71.0 - Download
-
DNA
- Publication(s)
- Yu Wang, et al. Time-ordering japonica/geng genomes analysis indicates the importance of largestructural variants in rice breeding. Plant Biotechnology Journal. 2022, 21(1): 202-18.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBKAV00000000 | - | LG5_chr_asm | Draft genome in chromosome level | 2022-09-20 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 379,589,978 |
| GC content | 43.51% |
| Genome sequence No. | 74 |
| Maximum genome sequence length (bp) | 43,700,585 |
| Minimum genome sequence length (bp) | 2,978 |
| Average genome sequence length (bp) | 5,129,594 |
| Genome sequence N50 (bp) | 30,021,334 |
| Genome sequence N90 (bp) | 23,898,637 |