- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA011659
- Biosample
- SAMC873102
- Accession No.
- GWHBKKT00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- Plant Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Xiaoman Yu, etaripy@163.com
- Sequence author(s)
- Lianguang Shang
- Released Date
- 2023-11-24
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.4
- Sequencing & coverage
- OXFORD_NANOPORE PromethION 79.3
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Jie Ma, et al. Compared analysis with a high-quality genome of weedy rice reveals theevolutionary game of de-domestication. Frontiers in Plant Science. 2022, 13.
Statistics of Genome Assembly
| Genome size (bp) | 375,675,464 |
| GC content | 43.47% |
| Genome sequence No. | 12 |
| Maximum genome sequence length (bp) | 43,539,134 |
| Minimum genome sequence length (bp) | 22,707,689 |
| Average genome sequence length (bp) | 31,306,289 |
| Genome sequence N50 (bp) | 30,015,514 |
| Genome sequence N90 (bp) | 23,780,629 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 35,423 | 35,423 |