- Scientific Name
- Eriobotrya japonica
- Common Names
- loquat; Crataegus bibas, Mespilus japonica, Rhaphiolepis bibas, Rhaphiolepis loquata
- Bioproject
- PRJCA008992
- Biosample
- SAMC785252
- Accession No.
- GWHBOTF00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR506306
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture and Landscape Architecture; Southwest University, Southeast University
- Contact
- Danlong Jing(jingdanlong@swu.edu.cn)
- Sequence author(s)
- Danlong Jing, Xinya Liu, Qiao He, Jiangbo Dang, Ruoqian Hu, Yan Xia, Di Wu, Shuming Wang, Yin Zhang, Qingqing Xia, Chi Zhang, Yuanhui Yu, Qigao Guo, Guolu Liang
- Released Date
- 2022-09-30
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- SMARTdenovo 1.0 2013
- Sequencing & coverage
- Nanopore 200.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Danlong Jing, et al. Genome assembly of wild loquat (Eriobotrya japonica) and re-sequencing provide new insights into the genomic evolution and fruit domestication in loquat. Horticulture Research. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 784,626,777 |
| GC content | 37.76% |
| Genome sequence No. | 230 |
| Maximum genome sequence length (bp) | 52,794,044 |
| Minimum genome sequence length (bp) | 62,239 |
| Average genome sequence length (bp) | 3,411,421 |
| Genome sequence N50 (bp) | 41,775,892 |
| Genome sequence N90 (bp) | 34,452,735 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 45,791 | 45,791 |