- Scientific Name
- Pseudophaeobacter sp.
- Common Names
- -
- Bioproject
- PRJCA012574
- Biosample
- SAMC928064
- Accession No.
- GWHBOWF00000000
- GWH reannotation accession
- GWHRA_BOWF00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Microbial Technology, Shandong University
- Contact
- Qilong Qin, qinqilong@sdu.edu.cn
- Sequence author(s)
- Qianqian Cha
- Released Date
- 2022-10-22
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- maxbin2 MetaWRAP
concoct MetaWRAP
metabat2 MetaWRAP - Sequencing & coverage
- Illumina NovaSeq 6000 95.44
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOWF00000000 | GWHRA_BOWF00000000.1 | 84_21 | Draft genome in scaffold level | 2022-10-22 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,610,204 |
| GC content | 58.85% |
| Scaffold sequence No. | 314 |
| Maximum scaffold sequence length (bp) | 182,086 |
| Minimum scaffold sequence length (bp) | 1,003 |
| Average scaffold sequence length (bp) | 14,682 |
| Scaffold N50 (bp) | 54,059 |
| Scaffold N90 (bp) | 8,149 |
Statistics of Genome Assembly
| Genome size (bp) | 4,610,204 |
| GC content | 58.85% |
| Scaffold sequence No. | 314 |
| Maximum scaffold sequence length (bp) | 182,086 |
| Minimum scaffold sequence length (bp) | 1,003 |
| Average scaffold sequence length (bp) | 14,682 |
| Scaffold N50 (bp) | 54,059 |
| Scaffold N90 (bp) | 8,149 |
Annotation of Whole Genome Assembly
| Protein | tRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 4,351 | 41 | 1 | 70 | 331 | 4,794 |