- Scientific Name
- Shewanella sp. MR-7
- Common Names
- -
- Bioproject
- PRJCA001475
- Biosample
- SAMC070722
- Accession No.
- GWHAAYS00000000
- GWH reannotation accession
- GWHRA_AAYS00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory of Aquaculture Nutrition and Feed, Ocean University of China
- Contact
- Chaoqun Li, 1148072849@qq.com
- Sequence author(s)
- Chaoqun Li
- Released Date
- 2019-06-04
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina HiSeq X Ten 93.86
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAYS00000000 | GWHRA_AAYS00000000.1 | Shewanella sp. MR-7 | Draft genome in scaffold level | 2019-06-04 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,742,420 |
| GC content | 47.88% |
| Scaffold sequence No. | 82 |
| Maximum scaffold sequence length (bp) | 241,408 |
| Minimum scaffold sequence length (bp) | 303 |
| Average scaffold sequence length (bp) | 57,834 |
| Scaffold N50 (bp) | 133,821 |
| Scaffold N90 (bp) | 43,225 |
Statistics of Genome Assembly
| Genome size (bp) | 4,742,420 |
| GC content | 47.88% |
| Scaffold sequence No. | 82 |
| Maximum scaffold sequence length (bp) | 241,408 |
| Minimum scaffold sequence length (bp) | 303 |
| Average scaffold sequence length (bp) | 57,834 |
| Scaffold N50 (bp) | 133,821 |
| Scaffold N90 (bp) | 43,225 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,035 | 113 | 11 | 1 | 46 | 98 | 4,304 |