- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA012309
- Biosample
- SAMC2913350
- Accession No.
- GWHDONQ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- Department of Agronomy, Zhejiang University
- Contact
- Lingjuan Xie, 1303748955@qq.com
- Sequence author(s)
- Dongya Wu
- Released Date
- 2023-07-18
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 2021-02
- Sequencing & coverage
- PacBio 0.38
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Dongya Wu, et al. A syntelog-based pan-genome provides insights into rice domestication andde-domestication. Genome Biology. 2023, 24.
Statistics of Genome Assembly
| Genome size (bp) | 393,526,968 |
| GC content | 43.62% |
| Scaffold sequence No. | 12 |
| Maximum scaffold sequence length (bp) | 45,065,562 |
| Minimum scaffold sequence length (bp) | 24,058,238 |
| Average scaffold sequence length (bp) | 32,793,914 |
| Scaffold N50 (bp) | 32,543,215 |
| Scaffold N90 (bp) | 26,038,905 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 37,564 | 37,564 |