- Scientific Name
- Pseudophaeobacter sp.
- Common Names
- -
- Bioproject
- PRJCA018239
- Biosample
- SAMC2923454
- Accession No.
- GWHDOYZ00000000
- GWH reannotation accession
- GWHRA_DOYZ00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Marine life science, Ocean University of China
- Contact
- Han Cui, cuihan@stu.ouc.edu.cn
- Sequence author(s)
- Han Cui
- Released Date
- 2023-07-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- maxbin 2.2.6
metabat 0.32.5
concoct 1.1 - Sequencing & coverage
- Illumina 10
Nanopore 30 - Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDOYZ00000000 | GWHRA_DOYZ00000000.1 | AA140_MAG_266 | Draft genome in scaffold level | 2023-07-21 |
DNA
GFF
RNA
Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,105,577 |
| GC content | 55.94% |
| Scaffold sequence No. | 103 |
| Maximum scaffold sequence length (bp) | 882,631 |
| Minimum scaffold sequence length (bp) | 5,128 |
| Average scaffold sequence length (bp) | 49,569 |
| Scaffold N50 (bp) | 226,239 |
| Scaffold N90 (bp) | 14,942 |
Statistics of Genome Assembly
| Genome size (bp) | 5,105,577 |
| GC content | 55.94% |
| Scaffold sequence No. | 103 |
| Maximum scaffold sequence length (bp) | 882,631 |
| Minimum scaffold sequence length (bp) | 5,128 |
| Average scaffold sequence length (bp) | 49,569 |
| Scaffold N50 (bp) | 226,239 |
| Scaffold N90 (bp) | 14,942 |
Annotation of Whole Genome Assembly
| Protein | tRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|
| Total | 4,799 | 69 | 34 | 118 | 5,020 |