- Scientific Name
- Alphaproteobacteria
- Common Names
- Alphabacteria, alpha proteobacteria, alpha subdivision, alpha subgroup, Proteobacteria alpha subdivision, Purple bacteria, alpha subdivision
- Bioproject
- PRJCA000796
- Biosample
- SAMC026963
- Accession No.
- GWHAACR00000000
- GWH reannotation accession
- GWHRA_AACR00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Science, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
- Contact
- Zhaoming Gao, gaozm@idsse.ac.cn
- Sequence author(s)
- Zhaoming Gao, Jiaomei Huang
- Released Date
- 2019-10-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes v3.6.2
- Sequencing & coverage
- MiSeq 205.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Zhaoming Gao, et al. In situ meta‐omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench. Environmental Microbiology. 2019.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAACR00000000 | GWHRA_AACR00000000.1 | TS03-MIX-P13 | Draft genome in scaffold level | 2019-10-10 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,006,055 |
| GC content | 30.96% |
| Scaffold sequence No. | 97 |
| Maximum scaffold sequence length (bp) | 42,027 |
| Minimum scaffold sequence length (bp) | 2,276 |
| Average scaffold sequence length (bp) | 10,372 |
| Scaffold N50 (bp) | 14,243 |
| Scaffold N90 (bp) | 5,102 |
Statistics of Genome Assembly
| Genome size (bp) | 1,006,055 |
| GC content | 30.96% |
| Scaffold sequence No. | 97 |
| Maximum scaffold sequence length (bp) | 42,027 |
| Minimum scaffold sequence length (bp) | 2,276 |
| Average scaffold sequence length (bp) | 10,372 |
| Scaffold N50 (bp) | 14,243 |
| Scaffold N90 (bp) | 5,102 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,094 | 15 | 1 | 16 | 101 | 1,227 |