- Scientific Name
- Sphingomonas
- Common Names
- -
- Bioproject
- PRJCA001911
- Biosample
- SAMC114037
- Accession No.
- GWHABGN00000000
- GWH reannotation accession
- GWHRA_ABGN00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China, Shanghai Jiao Tong University
- Contact
- Shanshan Yang, 1210882010@qq.com
- Sequence author(s)
- Shanshan Yang
- Released Date
- 2019-11-14
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 2020/02/29
- Sequencing & coverage
- Illumina PE150 200.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABGN00000000 | GWHRA_ABGN00000000.1 | Sphingomonas prati W18RDT | Draft genome in contig level | 2019-11-14 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,831,002 |
| GC content | 66.90% |
| Contig sequence No. | 29 |
| Maximum contig sequence length (bp) | 1,356,937 |
| Minimum contig sequence length (bp) | 1,099 |
| Average contig sequence length (bp) | 132,104 |
| Contig N50 (bp) | 382,680 |
| Contig N90 (bp) | 125,854 |
Statistics of Genome Assembly
| Genome size (bp) | 3,831,002 |
| GC content | 66.90% |
| Contig sequence No. | 29 |
| Maximum contig sequence length (bp) | 1,356,937 |
| Minimum contig sequence length (bp) | 1,099 |
| Average contig sequence length (bp) | 132,104 |
| Contig N50 (bp) | 382,680 |
| Contig N90 (bp) | 125,854 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 3,407 | 46 | 3 | 27 | 40 | 3,523 |