- Scientific Name
- Xanthomonas oryzae
- Common Names
- "Pseudomonas oryzae" Uyeda and Ishiyama in Ishiyama 1926
- Bioproject
- PRJNA257008
- Biosample
- SAMN03862118
- Accession No.
- GCA_001277095.1
- RefSeq Accession No.
- GCF_001277095.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- cBio Corp
- Released Date
- 2023-12-03
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_001277095.1 | GCF_001277095.1 | identical | XANT003-SEQ-2-ASM-1 | Draft genome in contig level | 2015-08-31 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,534,625 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 361 |
| Contig sequence No. | 361 |
| Contig L50 | 33 |
| Contig N50 (bp) | 38,903 |
| Unique components No. | 361 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3761 | 52 | 5 | 169 | 381 | 1 | 4369 |
Statistics of Genome Assembly
| Genome size (bp) | 4,534,625 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 361 |
| GC content | 64 |
| Contig sequence No. | 361 |
| Contig L50 | 33 |
| Contig N50 (bp) | 38,903 |
| Unique components No. | 361 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3607 | 51 | 5 | asse159 | 654 | 3 | 4479 |