- Scientific Name
- Xanthomonas oryzae
- Common Names
- "Pseudomonas oryzae" Uyeda and Ishiyama in Ishiyama 1926
- Bioproject
- PRJNA776110
- Biosample
- SAMN22739186
- Accession No.
- GCA_028752535.1
- RefSeq Accession No.
- GCF_028752535.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Institute of crop sciences, Chinese academy of agricultural sciences
- Released Date
- 2024-01-01
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_028752535.1 | GCF_028752535.1 | identical | ASM2875253v1 | Complete genome | 2023-02-21 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,889,891 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 1 |
| GC content | 63.5 |
| Scaffold sequence No. | 1 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,889,891 |
| Scaffold N75 (bp) | 4,889,891 |
| Scaffold N90 (bp) | 4,889,891 |
| Unique components No. | 1 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3610 | 53 | 6 | 144 | 757 | 3 | 4573 |
Statistics of Genome Assembly
| Genome size (bp) | 4,889,891 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 1 |
| GC content | 63.5 |
| Scaffold sequence No. | 1 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,889,891 |
| Scaffold N75 (bp) | 4,889,891 |
| Scaffold N90 (bp) | 4,889,891 |
| Unique components No. | 1 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3623 | 53 | 6 | asse144 | 752 | 3 | 4581 |