- Scientific Name
- Sphingobium sp.
- Common Names
- -
- Bioproject
- PRJNA879230
- Biosample
- SAMN30800986
- Accession No.
- GCA_029937275.1
- RefSeq Accession No.
- GCF_029937275.1
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Harvard University
- Released Date
- 2023-12-25
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_029937275.1 | GCF_029937275.1 | - | ASM2993727v1 | Draft genome in scaffold level | 2023-05-03 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,627,751 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 20 |
| GC content | 63.5 |
| Scaffold sequence No. | 20 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 328,619 |
| Scaffold N75 (bp) | 189,619 |
| Scaffold N90 (bp) | 116,798 |
| Contig sequence No. | 24 |
| Contig L50 | 6 |
| Contig N50 (bp) | 250,023 |
| Unique components No. | 20 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 4 |
| Ns gap sequence region length (bp) | 310 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 3,627,751 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 20 |
| GC content | 63.5 |
| Scaffold sequence No. | 20 |
| Scaffold L50 | 6 |
| Scaffold N50 (bp) | 328,619 |
| Scaffold N75 (bp) | 189,619 |
| Scaffold N90 (bp) | 116,798 |
| Contig sequence No. | 24 |
| Contig L50 | 6 |
| Contig N50 (bp) | 250,023 |
| Unique components No. | 20 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 4 |
| Ns gap sequence region length (bp) | 310 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3441 | 48 | 0 | asse0 | 40 | 3 | 3532 |