- Scientific Name
- Stenotrophomonas sp.
- Common Names
- -
- Bioproject
- PRJNA850115
- Biosample
- SAMN29163034
- Accession No.
- GCA_032099565.1
- RefSeq Accession No.
- GCF_032099565.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- NFDI4Microbiota
- Released Date
- 2023-11-16
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_032099565.1 | GCF_032099565.1 | identical | ASM3209956v1 | Draft genome in scaffold level | 2023-09-27 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,621,011 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 172 |
| GC content | 67.5 |
| Scaffold sequence No. | 172 |
| Scaffold L50 | 26 |
| Scaffold N50 (bp) | 47,917 |
| Scaffold N75 (bp) | 24,633 |
| Scaffold N90 (bp) | 12,457 |
| Contig sequence No. | 232 |
| Contig L50 | 37 |
| Contig N50 (bp) | 35,621 |
| Unique components No. | 172 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 60 |
| Ns gap sequence region length (bp) | 3,318 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 4,621,011 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 172 |
| GC content | 67.5 |
| Scaffold sequence No. | 172 |
| Scaffold L50 | 26 |
| Scaffold N50 (bp) | 47,917 |
| Scaffold N75 (bp) | 24,633 |
| Scaffold N90 (bp) | 12,457 |
| Contig sequence No. | 232 |
| Contig L50 | 37 |
| Contig N50 (bp) | 35,621 |
| Unique components No. | 172 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 60 |
| Ns gap sequence region length (bp) | 3,318 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4174 | 59 | 4 | asse1 | 119 | 3 | 4360 |