- Scientific Name
- Xanthomonas oryzae
- Common Names
- "Pseudomonas oryzae" Uyeda and Ishiyama in Ishiyama 1926
- Bioproject
- PRJNA522811
- Biosample
- SAMN10956066
- Accession No.
- GCA_004319505.1
- RefSeq Accession No.
- GCF_004319505.1
- RefSeq vs GenBank similarity
- identical
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Colorado State University
- Released Date
- 2023-12-27
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_004319505.1 | GCF_004319505.1 | identical | ASM431950v1 | Complete genome | 2019-02-28 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,752,833 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 1 |
| Scaffold sequence No. | 1 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,752,833 |
| Scaffold N75 (bp) | 4,752,833 |
| Scaffold N90 (bp) | 4,752,833 |
| Unique components No. | 1 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3738 | 54 | 6 | 162 | 556 | 3 | 4519 |
Statistics of Genome Assembly
| Genome size (bp) | 4,752,833 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 1 |
| GC content | 64 |
| Scaffold sequence No. | 1 |
| Scaffold L50 | 1 |
| Scaffold N50 (bp) | 4,752,833 |
| Scaffold N75 (bp) | 4,752,833 |
| Scaffold N90 (bp) | 4,752,833 |
| Unique components No. | 1 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 0 |
| Ns gap sequence region length (bp) | 0 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3650 | 53 | 6 | asse162 | 424 | 3 | 4298 |