- Scientific Name
- Penaeus monodon
- Common Names
- giant tiger prawn,tiger prawn; black tiger shrimp; Penaeus bubulus, Penaeus carinatus, Penaeus durbani, Penaeus (Penaeus) monodon
- Bioproject
- PRJNA611030
- Biosample
- SAMN14330694
- Accession No.
- GCA_015228065.1
- RefSeq Accession No.
- GCF_015228065.2
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- SAFE-Aqua
- Released Date
- 2023-12-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_015228065.1 | GCF_015228065.1 | different | NSTDA_Pmon_1 | Draft genome in chromosome level | 2020-11-05 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
| GCA_015228065.1 | GCF_015228065.2 | different | NSTDA_Pmon_1 | Draft genome in chromosome level | 2020-11-05 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,394,331,783 |
| Chromosomes, organellas and plasmids sequnece No. | 44 |
| Genome sequence No. | 26,875 |
| Scaffold sequence No. | 26,875 |
| Scaffold L50 | 23 |
| Scaffold N50 (bp) | 44,862,054 |
| Scaffold N75 (bp) | 34,638,043 |
| Scaffold N90 (bp) | 25,075 |
| Contig sequence No. | 1,185,584 |
| Contig L50 | 8,354 |
| Contig N50 (bp) | 45,084 |
| Unique components No. | 26,875 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,158,709 |
| Ns gap sequence region length (bp) | 393,564,173 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,391,056,164 |
| Chromosomes, organellas and plasmids sequnece No. | 45 |
| Genome sequence No. | 26,635 |
| GC content | 36.5 |
| Scaffold sequence No. | 26,635 |
| Scaffold L50 | 23 |
| Scaffold N50 (bp) | 44,862,054 |
| Scaffold N75 (bp) | 34,638,043 |
| Scaffold N90 (bp) | 25,352 |
| Contig sequence No. | 1,185,337 |
| Contig L50 | 8,323 |
| Contig N50 (bp) | 45,188 |
| Unique components No. | 26,635 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 1,158,702 |
| Ns gap sequence region length (bp) | 393,563,473 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 24011 | 1916 | 152 | asse2178 | 3153 | 4 | 31414 |