- Scientific Name
- Thaumarchaeota archaeon
- Common Names
- -
- Bioproject
- PRJNA449266
- Biosample
- SAMN11380681
- Accession No.
- GCA_005877205.1
- RefSeq Accession No.
- -
- RefSeq vs GenBank similarity
- -
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Jill Banfield's Lab at Berkeley
- Released Date
- 2023-12-27
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- -
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 1,562,348 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 98 |
| GC content | 38.5 |
| Scaffold sequence No. | 98 |
| Scaffold L50 | 15 |
| Scaffold N50 (bp) | 33,414 |
| Scaffold N75 (bp) | 14,613 |
| Scaffold N90 (bp) | 6,049 |
| Contig sequence No. | 105 |
| Contig L50 | 15 |
| Contig N50 (bp) | 33,414 |
| Unique components No. | 98 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 7 |
| Ns gap sequence region length (bp) | 238 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 1744 | 38 | 2 | 0 | 27 | 2 | 1813 |