- Scientific Name
- Phasianus colchicus
- Common Names
- common pheasant; Ring-necked pheasant;
- Bioproject
- PRJNA449162
- Biosample
- SAMN08888240
- Accession No.
- GCA_004143745.1
- RefSeq Accession No.
- GCF_004143745.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- Shenzhen University
- Released Date
- 2023-12-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_004143745.1 | GCF_004143745.1 | different | ASM414374v1 | Draft genome in scaffold level | 2019-02-06 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,017,507,340 |
| Chromosomes, organellas and plasmids sequnece No. | 0 |
| Genome sequence No. | 39,677 |
| Scaffold sequence No. | 39,677 |
| Scaffold L50 | 27 |
| Scaffold N50 (bp) | 10,682,894 |
| Scaffold N75 (bp) | 4,709,314 |
| Scaffold N90 (bp) | 970,291 |
| Contig sequence No. | 58,369 |
| Contig L50 | 1,390 |
| Contig N50 (bp) | 197,843 |
| Unique components No. | 39,677 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 18,692 |
| Ns gap sequence region length (bp) | 7,937,843 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 1,017,524,032 |
| Chromosomes, organellas and plasmids sequnece No. | 1 |
| Genome sequence No. | 39,678 |
| GC content | 41 |
| Scaffold sequence No. | 39,678 |
| Scaffold L50 | 27 |
| Scaffold N50 (bp) | 10,682,894 |
| Scaffold N75 (bp) | 4,709,314 |
| Scaffold N90 (bp) | 970,291 |
| Contig sequence No. | 58,370 |
| Contig L50 | 1,390 |
| Contig N50 (bp) | 197,843 |
| Unique components No. | 39,678 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 18,692 |
| Ns gap sequence region length (bp) | 7,937,843 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 16222 | 277 | 8 | asse2684 | 167 | 55 | 19413 |