- Scientific Name
- Carya illinoinensis
- Common Names
- pecan; Carya illinoensis
- Bioproject
- PRJNA680556
- Biosample
- SAMN16882287
- Accession No.
- GCA_018687715.1
- RefSeq Accession No.
- GCF_018687715.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- DOE Joint Genome Institute
- Released Date
- 2023-12-15
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA GFF RNA Protein
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_018687715.1 | GCF_018687715.1 | different | C.illinoinensisPawnee_v1 | Draft genome in chromosome level | 2021-06-03 | DNA GFF RNA Protein RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 674,272,338 |
| Chromosomes, organellas and plasmids sequnece No. | 16 |
| Genome sequence No. | 16 |
| Scaffold sequence No. | 34 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 26,527,444 |
| Scaffold N75 (bp) | 22,064,091 |
| Scaffold N90 (bp) | 14,530,884 |
| Contig sequence No. | 38 |
| Contig L50 | 10 |
| Contig N50 (bp) | 26,032,966 |
| Unique components No. | 38 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 4 |
| Ns gap sequence region length (bp) | 180,295 |
| Gaps No. between scaffolds | 18 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 32267 | 0 | 0 | 0 | 0 | 0 | 32267 |
Statistics of Genome Assembly
| Genome size (bp) | 674,433,157 |
| Chromosomes, organellas and plasmids sequnece No. | 17 |
| Genome sequence No. | 17 |
| Scaffold sequence No. | 35 |
| Scaffold L50 | 9 |
| Scaffold N50 (bp) | 26,527,444 |
| Scaffold N75 (bp) | 22,064,091 |
| Scaffold N90 (bp) | 14,530,884 |
| Contig sequence No. | 39 |
| Contig L50 | 10 |
| Contig N50 (bp) | 26,032,966 |
| Unique components No. | 39 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 4 |
| Ns gap sequence region length (bp) | 180,295 |
| Gaps No. between scaffolds | 18 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 31494 | 462 | 5815 | asse5290 | 2367 | 1 | 45429 |