Leaf Senescence DataBase

Basic information

Locus name

AT5G62620

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Lipid/Carbohydrate metabolism

Effect for Senescence

unclear

Gene Description

galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	protein glycosylation
cellular component	membrane
molecular function	carbohydrate binding galactosyltransferase activity

Pathway

KEGG

map00051 (EC 2.4.1.-)
map00510 (EC 2.4.1.-)
map00512 (EC 2.4.1.-)
map00513 (EC 2.4.1.-)
map00514 (EC 2.4.1.-)
map00522 (EC 2.4.1.-)
map00524 (EC 2.4.1.-)
map00533 (EC 2.4.1.-)
map00540 (EC 2.4.1.-)
map00550 (EC 2.4.1.-)
map00561 (EC 2.4.1.-)
map00563 (EC 2.4.1.-)
map00600 (EC 2.4.1.-)
map00601 (EC 2.4.1.-)
map00603 (EC 2.4.1.-)
map00604 (EC 2.4.1.-)
map00906 (EC 2.4.1.-)
map00908 (EC 2.4.1.-)
map00941 (EC 2.4.1.-)
map00942 (EC 2.4.1.-)
map00944 (EC 2.4.1.-)
map00945 (EC 2.4.1.-)
map00965 (EC 2.4.1.-)

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details


target: AT5G62620.1 miRNA: ath-miR844 miRNA: ath-miR844 mfe: -21.9 kcal/mol p-value: 0.077139 position: 1720 target 5' U G G 3'