Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-Cell RNA-Sequencing and Spatial Transcriptomic and Metabolomic Analyses
| Title | Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-Cell RNA-Sequencing and Spatial Transcriptomic and Metabolomic Analyses |
|---|---|
| Description | In the present study, we investigated the spatial and single-cell expression profiles of key genes and the metabolic patterns of key metabolites by integrated single-cell RNA-sequencing (scRNA-seq), spatial transcriptomics (ST), and spatial metabolomics (SM). To evaluate the results of these analyses, we functionally characterized the potential roles of two representative marker genes, AATP1 and DOX2, in the regulation of cotton somatic embryo development. |
| Organism | Gossypium hirsutum |
| Data Type | Metabolome Data by Mass Spectrometry (MS) |
| Data Accessibility | Open-access |
| BioProject | PRJCA019722 |
| Release Date | 2023-09-13 |
| Submitter | xuwu sun (sunxuwussd@sina.com) |
| Organization | State Key Laboratory of Cotton Biology, State Key Laboratory of Crop Stress Adaptation and Improvement, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University |
| Submission Date | 2023-09-12 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX004900-01 | Cotyledonary_embryo_1_2_3_4_5_6_pos | 6 | Metabolome Data by Mass Spectrometry (MS) | 651.22 MB | zip | 0 | |
| OMIX004900-02 | Torpedo_embryo_1_2_3_4_5_6_neg | 6 | Metabolome Data by Mass Spectrometry (MS) | 593.11 MB | zip | 0 | |
| OMIX004900-03 | Globular_embryo_1_2_3_4_5_6_pos | 6 | Metabolome Data by Mass Spectrometry (MS) | 643.2 MB | zip | 0 | |
| OMIX004900-04 | Globular_embryo_1_2_3_4_5_6_neg | 6 | Metabolome Data by Mass Spectrometry (MS) | 611.81 MB | zip | 0 | |
| OMIX004900-05 | QC1_2_3_4_pos | 4 | Metabolome Data by Mass Spectrometry (MS) | 431.01 MB | zip | 0 | |
| OMIX004900-06 | Cotyledon_1_2_3_4_5_6_pos | 6 | Metabolome Data by Mass Spectrometry (MS) | 641.2 MB | zip | 0 | |
| OMIX004900-07 | Cotyledon_1_2_3_4_5_6_neg | 6 | Metabolome Data by Mass Spectrometry (MS) | 574.95 MB | zip | 0 | |
| OMIX004900-08 | Cotyledonary_embryo_1_2_3_4_5_6_neg | 6 | Metabolome Data by Mass Spectrometry (MS) | 587.77 MB | zip | 0 | |
| OMIX004900-09 | QC1_2_3_4_neg | 4 | Metabolome Data by Mass Spectrometry (MS) | 399.52 MB | zip | 0 | |
| OMIX004900-10 | Torpedo_embryo_1_2_3_4_5_6_pos | 6 | Metabolome Data by Mass Spectrometry (MS) | 645.28 MB | zip | 0 |