OMIX010494

1Summary
Title scATAC-seq dataset in hECA version 2.0
Description hECA version 2.0 is the extended version of the human Ensemble Cell Atlas(PRJCA008680). This datasets contains all standardized scATAC-seq of the 1,452,233 cells/nucleis. We unified the peak regions with cpeak and harmonized information and cell-type annotations with uHAF.
Organism Homo sapiens
Data Type Chromatin Accessibility Profiling
Data Accessibility Open-access
BioProject PRJCA033148
Release Date 2025-06-13
Submitter Yixin Chen (ysionchen@gmail.com)
Organization Tsinghua University
Submission Date 2025-06-10
2Files & Download

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File ID File Title Number/Samples File Type File Size File Suffix Download
OMIX010494-02 ATAC-all.h5ad.zip.001 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.001
OMIX010494-03 ATAC-all.h5ad.zip.005 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.005
OMIX010494-04 ATAC-all.h5ad.zip.004 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.004
OMIX010494-05 ATAC-all.h5ad.zip.003 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.003
OMIX010494-06 ATAC-all.h5ad.zip.002 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.002
OMIX010494-07 ATAC-all.h5ad.zip.006 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.006
OMIX010494-08 ATAC-all.h5ad.zip.007 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.007
OMIX010494-09 ATAC-all.h5ad.zip.008 1 Chromatin Accessibility Profiling 2 GB h5ad.zip.008
OMIX010494-10 ATAC-all.h5ad.zip.009 1 Chromatin Accessibility Profiling 734.05 MB h5ad.zip.009
OMIX010494-11 ATAC-Adipose.h5ad.zip 1 Chromatin Accessibility Profiling 112.36 MB h5ad.zip
OMIX010494-12 ATAC-Adrenal_gland.h5ad.zip 1 Chromatin Accessibility Profiling 88.2 MB h5ad.zip
OMIX010494-13 ATAC-Blood.h5ad.zip 1 Chromatin Accessibility Profiling 93.59 MB h5ad.zip
OMIX010494-14 ATAC-Bone_marrow.h5ad.zip 1 Chromatin Accessibility Profiling 100.56 MB h5ad.zip
OMIX010494-15 ATAC-Brain.h5ad.zip 1 Chromatin Accessibility Profiling 4.02 GB h5ad.zip
OMIX010494-16 ATAC-Colon.h5ad.zip 1 Chromatin Accessibility Profiling 330.39 MB h5ad.zip
OMIX010494-17 ATAC-Eye.h5ad.zip 1 Chromatin Accessibility Profiling 204 MB h5ad.zip
OMIX010494-18 ATAC-Heart.h5ad.zip 1 Chromatin Accessibility Profiling 1.13 GB h5ad.zip
OMIX010494-19 ATAC-Intestine.h5ad.zip 1 Chromatin Accessibility Profiling 538.55 MB h5ad.zip
OMIX010494-20 ATAC-Kidney.h5ad.zip 1 Chromatin Accessibility Profiling 1.78 GB h5ad.zip
OMIX010494-21 ATAC-Liver.h5ad.zip 1 Chromatin Accessibility Profiling 1.18 GB h5ad.zip
OMIX010494-22 ATAC-Lung.h5ad.zip 1 Chromatin Accessibility Profiling 4.21 GB h5ad.zip
OMIX010494-23 ATAC-Muscle.h5ad.zip 1 Chromatin Accessibility Profiling 344.14 MB h5ad.zip
OMIX010494-24 ATAC-Oesophagus.h5ad.zip 1 Chromatin Accessibility Profiling 791.16 MB h5ad.zip
OMIX010494-25 ATAC-Ovary.h5ad.zip 1 Chromatin Accessibility Profiling 54.58 MB h5ad.zip
OMIX010494-26 ATAC-Pancreas.h5ad.zip 1 Chromatin Accessibility Profiling 405.87 MB h5ad.zip
OMIX010494-27 ATAC-Peripheral_nerve_system.h5ad.zip 1 Chromatin Accessibility Profiling 82.05 MB h5ad.zip
OMIX010494-28 ATAC-Placenta.h5ad.zip 1 Chromatin Accessibility Profiling 614.79 MB h5ad.zip
OMIX010494-29 ATAC-Skin.h5ad.zip 1 Chromatin Accessibility Profiling 149.84 MB h5ad.zip
OMIX010494-30 ATAC-Spleen.h5ad.zip 1 Chromatin Accessibility Profiling 42 MB h5ad.zip
OMIX010494-31 ATAC-Stomach.h5ad.zip 1 Chromatin Accessibility Profiling 197.45 MB h5ad.zip
OMIX010494-32 ATAC-Thymus.h5ad.zip 1 Chromatin Accessibility Profiling 418.73 MB h5ad.zip
OMIX010494-33 ATAC-Thyroid.h5ad.zip 1 Chromatin Accessibility Profiling 276.53 MB h5ad.zip
OMIX010494-34 ATAC-Uterus.h5ad.zip 1 Chromatin Accessibility Profiling 82.7 MB h5ad.zip
OMIX010494-35 ATAC-Vessel.h5ad.zip 1 Chromatin Accessibility Profiling 349.3 MB h5ad.zip
3Relevant Publications
Paper Title Journal Name Publish Time Accession Citing Type
hECA v2. 0: an AI-ready ensemble cell atlas of single-cell RNA and ATAC sequencing data Scientific Data 2025-12 OMIX010495 OMIX010494 Deposit

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