| Title | scRNA-seq dataset in hECA version 2.0 |
|---|---|
| Description | hECA version 2.0 is the extended version of the human Ensemble Cell Atlas(PRJCA008680). This datasets contains all standardized expression profiles and metadata of the 10,831,024 cells/nucleis. We unified the gene symbols and harmonized information and cell-type annotations with uHAF. |
| Organism | Homo sapiens |
| Data Type | Expression Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA033148 |
| Release Date | 2025-06-13 |
| Submitter | Yixin Chen (ysionchen@gmail.com) |
| Organization | Tsinghua University |
| Submission Date | 2025-06-10 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX010495-01 | RNA-all.h5ad.zip.001 | 1 | Expression Profiling | 2 GB | h5ad.zip.001 | |
| OMIX010495-02 | RNA-all.h5ad.zip.018 | 1 | Expression Profiling | 1.2 GB | h5ad.zip.018 | |
| OMIX010495-03 | RNA-all.h5ad.zip.017 | 1 | Expression Profiling | 2 GB | h5ad.zip.017 | |
| OMIX010495-04 | RNA-all.h5ad.zip.016 | 1 | Expression Profiling | 2 GB | h5ad.zip.016 | |
| OMIX010495-05 | RNA-all.h5ad.zip.015 | 1 | Expression Profiling | 2 GB | h5ad.zip.015 | |
| OMIX010495-06 | RNA-all.h5ad.zip.014 | 1 | Expression Profiling | 2 GB | h5ad.zip.014 | |
| OMIX010495-07 | RNA-all.h5ad.zip.013 | 1 | Expression Profiling | 2 GB | h5ad.zip.013 | |
| OMIX010495-08 | RNA-all.h5ad.zip.012 | 1 | Expression Profiling | 2 GB | h5ad.zip.012 | |
| OMIX010495-09 | RNA-all.h5ad.zip.011 | 1 | Expression Profiling | 2 GB | h5ad.zip.011 | |
| OMIX010495-10 | RNA-all.h5ad.zip.010 | 1 | Expression Profiling | 2 GB | h5ad.zip.010 | |
| OMIX010495-11 | RNA-all.h5ad.zip.009 | 1 | Expression Profiling | 2 GB | h5ad.zip.009 | |
| OMIX010495-12 | RNA-all.h5ad.zip.008 | 1 | Expression Profiling | 2 GB | h5ad.zip.008 | |
| OMIX010495-13 | RNA-all.h5ad.zip.007 | 1 | Expression Profiling | 2 GB | h5ad.zip.007 | |
| OMIX010495-14 | RNA-all.h5ad.zip.006 | 1 | Expression Profiling | 2 GB | h5ad.zip.006 | |
| OMIX010495-15 | RNA-all.h5ad.zip.005 | 1 | Expression Profiling | 2 GB | h5ad.zip.005 | |
| OMIX010495-16 | RNA-all.h5ad.zip.004 | 1 | Expression Profiling | 2 GB | h5ad.zip.004 | |
| OMIX010495-17 | RNA-all.h5ad.zip.003 | 1 | Expression Profiling | 2 GB | h5ad.zip.003 | |
| OMIX010495-18 | RNA-all.h5ad.zip.002 | 1 | Expression Profiling | 2 GB | h5ad.zip.002 | |
| OMIX010495-19 | RNA-Eye.h5ad.zip | 1 | Expression Profiling | 2.25 GB | h5ad.zip | |
| OMIX010495-19 | RNA-Eye.h5ad.zip | 1 | Expression Profiling | 2.25 GB | h5ad.zip | |
| OMIX010495-21 | RNA-Salivary_gland.h5ad.zip | 1 | Expression Profiling | 536.53 MB | h5ad.zip | |
| OMIX010495-22 | RNA-Pleura.h5ad.zip | 1 | Expression Profiling | 97.99 MB | h5ad.zip | |
| OMIX010495-23 | RNA-Trachea.h5ad.zip | 1 | Expression Profiling | 1.45 GB | h5ad.zip | |
| OMIX010495-24 | RNA-Spleen.h5ad.zip | 1 | Expression Profiling | 1.42 GB | h5ad.zip | |
| OMIX010495-25 | RNA-Stomach.h5ad.zip | 1 | Expression Profiling | 74.12 MB | h5ad.zip | |
| OMIX010495-26 | RNA-Uterine_tube.h5ad.zip | 1 | Expression Profiling | 1.24 GB | h5ad.zip | |
| OMIX010495-27 | RNA-Uterus.h5ad.zip | 1 | Expression Profiling | 1.81 GB | h5ad.zip | |
| OMIX010495-28 | RNA-Adipose.h5ad.zip | 1 | Expression Profiling | 595.02 MB | h5ad.zip | |
| OMIX010495-29 | RNA-Rib.h5ad.zip | 1 | Expression Profiling | 10.51 MB | h5ad.zip | |
| OMIX010495-30 | RNA-Intestine.h5ad.zip | 1 | Expression Profiling | 1.65 GB | h5ad.zip | |
| OMIX010495-31 | RNA-Thymus.h5ad.zip | 1 | Expression Profiling | 1.11 GB | h5ad.zip | |
| OMIX010495-32 | RNA-Blood.h5ad.zip | 1 | Expression Profiling | 2.29 GB | h5ad.zip | |
| OMIX010495-33 | RNA-Pancreas.h5ad.zip | 1 | Expression Profiling | 1.11 GB | h5ad.zip | |
| OMIX010495-34 | RNA-Liver.h5ad.zip | 1 | Expression Profiling | 1.8 GB | h5ad.zip | |
| OMIX010495-35 | RNA-Ureter.h5ad.zip | 1 | Expression Profiling | 987.39 MB | h5ad.zip | |
| OMIX010495-36 | RNA-Adrenal_gland.h5ad.zip | 1 | Expression Profiling | 2 GB | h5ad.zip | |
| OMIX010495-37 | RNA-Vessel.h5ad.zip | 1 | Expression Profiling | 49.3 MB | h5ad.zip | |
| OMIX010495-38 | RNA-Nose.h5ad.zip | 1 | Expression Profiling | 343.65 MB | h5ad.zip | |
| OMIX010495-39 | RNA-Femur.h5ad.zip | 1 | Expression Profiling | 26.49 MB | h5ad.zip | |
| OMIX010495-40 | RNA-Spinal_cord.h5ad.zip | 1 | Expression Profiling | 15.23 GB | h5ad.zip | |
| OMIX010495-41 | RNA-Bladder.h5ad.zip | 1 | Expression Profiling | 610.31 MB | h5ad.zip | |
| OMIX010495-42 | RNA-Brain.h5ad.zip | 1 | Expression Profiling | 3.63 GB | h5ad.zip | |
| OMIX010495-43 | RNA-Prostate.h5ad.zip | 1 | Expression Profiling | 2.07 GB | h5ad.zip | |
| OMIX010495-44 | RNA-Kidney.h5ad.zip | 1 | Expression Profiling | 2.99 GB | h5ad.zip | |
| OMIX010495-45 | RNA-Heart.h5ad.zip | 1 | Expression Profiling | 5.25 GB | h5ad.zip | |
| OMIX010495-46 | RNA-Lymph_node.h5ad.zip | 1 | Expression Profiling | 284.5 MB | h5ad.zip | |
| OMIX010495-47 | RNA-Gallbladder.h5ad.zip | 1 | Expression Profiling | 91.86 MB | h5ad.zip | |
| OMIX010495-48 | RNA-Bronchi.h5ad.zip | 1 | Expression Profiling | 640.31 MB | h5ad.zip | |
| OMIX010495-49 | RNA-Thyroid.h5ad.zip | 1 | Expression Profiling | 27.03 MB | h5ad.zip | |
| OMIX010495-50 | RNA-Breast.h5ad.zip | 1 | Expression Profiling | 224.84 MB | h5ad.zip | |
| OMIX010495-51 | RNA-Skin.h5ad.zip | 1 | Expression Profiling | 8.74 GB | h5ad.zip | |
| OMIX010495-52 | RNA-Testis.h5ad.zip | 1 | Expression Profiling | 2.06 GB | h5ad.zip | |
| OMIX010495-53 | RNA-Muscle.h5ad.zip | 1 | Expression Profiling | 1.27 GB | h5ad.zip | |
| OMIX010495-54 | RNA-Oral_cavity.h5ad.zip | 1 | Expression Profiling | 498.29 MB | h5ad.zip | |
| OMIX010495-55 | RNA-Placenta.h5ad.zip | 1 | Expression Profiling | 30.36 MB | h5ad.zip | |
| OMIX010495-56 | RNA-Bone_marrow.h5ad.zip | 1 | Expression Profiling | 1.81 GB | h5ad.zip | |
| OMIX010495-57 | RNA-Oesophagus.h5ad.zip | 1 | Expression Profiling | 1.37 GB | h5ad.zip | |
| OMIX010495-58 | RNA-Lung.h5ad.zip | 1 | Expression Profiling | 4.73 GB | h5ad.zip |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| hECA v2. 0: an AI-ready ensemble cell atlas of single-cell RNA and ATAC sequencing data | Scientific Data | 2025-12 | OMIX010495 OMIX010494 | Deposit |