Gm_DFD3_00451 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: Gm_DFD3_00451
Synonym: NA
Description: In CRISPR-edited soybean hairy roots, disruption of Gm_DFD3_00451 reduced ndhD-878 editing efficiency and altered drought-related physiological traits
Protein Family: Pentatricopeptide repeat (PPR)
Subclass: DYW
Physical Interaction: NA
Construct Structure: NA
Gene ID & Species: Glyma.01G048100 (Glycine max)
Edited Gene(s): ndhD
Editing Type(s): C-to-U (4)
Publication(s): [1] Integrated analysis of organelle RNA editing and DYW- type PPR genes identifies a candidate regulator of plastid ndhD-878 editing under drought stress in soybean, Frontiers in Plant Science, 2026. [PMID=42519610]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Glycine max Glyma.01G048100 Plastid ndhD 878 CDS Wm82_a6 OR664111.1 Genomic region 121502 C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Dongfudou 3EVWell-watered conditions; Empty-vector controlControl plants were maintained at approximately 80–85% field capacityNo mutantUnder well-watered conditions, the MDA content in KO-4 was significantly higher than in EV; Under well-watered conditions, POD activity in KO-4 was significantly lower than in EV; Drought stress significantly induced soluble sugar accumulation in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DSRootNASanger sequencing of the purified PCR product82.00%HighNone42519610
Dongfudou 3EV-DSDrought stress treatment; Empty-vector controlFor drought treatment, irrigation was withheld until soil water content decreased to 50–55% field capacity on day 5, when plants showed mild drought symptomsNo mutantDrought stress markedly increased MDA levels in both genotypes, with KO-4-DS consistently showing significantly higher MDA content than EV-DS under stress; Drought stress significantly induced POD activity in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DS; Drought stress significantly induced soluble sugar accumulation in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DS; Soluble sugar content in KO-4-DS remained significantly lower than in EV-DS under stressRootNASanger sequencing of the purified PCR product22.00%LowNone42519610
Dongfudou 3KO-4Well-watered conditions; CRISPR knockoutControl plants were maintained at approximately 80–85% field capacity; The CRISPR/Cas9-mediated gene editing construct targeting Gm_DFD3_00451 was introduced into K599 for hairy root-mediated transforKnockoutUnder well-watered conditions, the MDA content in KO-4 was significantly higher than in EV; Under well-watered conditions, POD activity in KO-4 was significantly lower than in EV; Drought stress significantly induced soluble sugar accumulation in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DSRootNASanger sequencing of the purified PCR product0.00%UneditedAbsent42519610
Dongfudou 3KO-4-DSDrought stress treatment; CRISPR knockoutFor drought treatment, irrigation was withheld until soil water content decreased to 50–55% field capacity on day 5, when plants showed mild drought symptoms; The CRISPR/Cas9-mediated gene editing conKnockoutDrought stress markedly increased MDA levels in both genotypes, with KO-4-DS consistently showing significantly higher MDA content than EV-DS under stress; Drought stress significantly induced POD activity in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DS; Drought stress significantly induced soluble sugar accumulation in both genotypes, but the increase in KO-4-DS was markedly smaller than that in EV-DS; Soluble sugar content in KO-4-DS remained significantly lower than in EV-DS under stressRootNASanger sequencing of the purified PCR product0.00%UneditedAbsent42519610
Last update: Feb 2026 (version 2.0)