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Expression Matrices - Plant Editosome Database - CNCB-NGDC
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Expression matrices for editing factor hallmark domain-containing genes.

Lineage Taxonomy ID Species GEN Dataset ID Biological Contexts Dataset Description PPR MORF ORRM OZ
Angiosperms4530Oryza sativaGEND000254AbioticVariation in transcriptional responses to salt stress in rice
Angiosperms4530Oryza sativaGEND000255DevelopmentRNA-seq and DNA methylomes of germinating rice and developing coleoptiles
Angiosperms4530Oryza sativaGEND000256Abiotic; GenotypeTranscriptome profile of rice genotypes IR24 and IRBB67 in interaction with Xanthomonas oryzae pv. oryzae under two temperature regimes
Angiosperms4530Oryza sativaGEND000257AbioticDynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
Angiosperms4530Oryza sativaGEND000258AbioticCharacterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels
Angiosperms4530Oryza sativaGEND000259DevelopmentOsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice
Angiosperms4530Oryza sativaGEND000260DevelopmentFundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice
Angiosperms4530Oryza sativaGEND000261Development; AnatomymRNA sequencing of whole 15 d old Oryza sativa shoots
Angiosperms4530Oryza sativaGEND000286Abiotic; AnatomySpatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery
Angiosperms4530Oryza sativaGEND000287DevelopmentGenome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
Angiosperms4530Oryza sativaGEND000288Abiotic; AnatomyGene expression profiling of the early cadmium response includes abiotic stress signaling pathway in rice
Angiosperms4530Oryza sativaGEND000289GenotypeTranscriptome profiling in reciprocal hybrids and tetraploids constructed from subspecies japonica and indica of Asian rice (Oryza sativa L.)
Angiosperms4530Oryza sativaGEND000290GenotypeMutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality
Angiosperms4530Oryza sativaGEND000291DevelopmentRice germline‐specific argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs
Angiosperms4530Oryza sativaGEND000292GenotypeRetrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes
Angiosperms4530Oryza sativaGEND000293Abiotic; GenotypeDiversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles
Angiosperms4530Oryza sativaGEND000294Abiotic; HormoneComparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)
Angiosperms4530Oryza sativaGEND000295AnatomyInternational Rice Genome Sequencing Project
Angiosperms4530Oryza sativaGEND000296GenotypeLoss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition
Angiosperms4530Oryza sativaGEND000297BioticHost transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola
Angiosperms4530Oryza sativaGEND000298BioticHost transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31
Angiosperms4530Oryza sativaGEND000299Genotype; AbioticStranded RNA-seq and methylomes for the rice DCL3a RNAi experiment
Angiosperms4530Oryza sativaGEND000300AnatomyStranded RNA-seq for rice after 3, 24 and 52 days of Pi stress
Angiosperms4530Oryza sativaGEND000301AbioticRice nucleosome and gene expression
Angiosperms4530Oryza sativaGEND000302AbioticOryza sativa transcriptome under micronutrient deficiency in root
Angiosperms4530Oryza sativaGEND000311Development; AnatomyDynamic RNA-Seq of rice shoot gravitropism
Angiosperms4530Oryza sativaGEND000316HormoneDifferential regulation of internode elongation by brassinosteroid
Angiosperms4530Oryza sativaGEND000317GenotypeRNA-seq of rice 9311 at Taoyuan
Angiosperms4530Oryza sativaGEND000319AbioticGenomic basis of rice geographic adaptation to soil nitrogen
Angiosperms4530Oryza sativaGEND000320Abiotic; HormoneCombining transcriptome and metabolome analyses of 02428 seedlings after salt and melatonin stress
Angiosperms4530Oryza sativaGEND000321DevelopmentREM20 regulates rice panicle development
Angiosperms4530Oryza sativaGEND000511GenotypeOverlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation
Angiosperms4530Oryza sativaGEND000512Anatomy; DevelopmentRNA-seq analysis of different sub-regions of developing grains in rice
Angiosperms4530Oryza sativaGEND000513BioticThe RNA-seq analysis of rice roots colonized by the endophytic bacterium Azoarcus olearius BH72 after one-, three- and seven-days post inoculation and after three days of boosted colonization
Angiosperms4530Oryza sativaGEND000514AnatomyRice root response atlas
Angiosperms4530Oryza sativaGEND000515DevelopmentThe evening complex integrates photoperiod signals to control flowering in rice
Angiosperms4530Oryza sativaGEND000516Abiotic; BioticTranscriptome analysis of piperonylic acid-treated, meloidogyne graminicola-inoculated rice roots
Angiosperms4530Oryza sativaGEND000517AbioticA plant-specific splicing factor RS33 regulates abiotic stress responses in rice
Angiosperms4530Oryza sativaGEND000518Abiotic; BioticTranscriptome analysis of piperonylic acid-treated, meloidogyne graminicola-inoculated rice roots
Angiosperms4530Oryza sativaGEND000519Abiotic; DevelopmentA lamin-like protein OsNMCP1 regulates drought resistance and root growth partially through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice
Angiosperms4530Oryza sativaGEND000520DevelopmentThe rice pseudo phosphotransfer proteins are negative regulators of endogenous cytokinin signaling and affect multiple aspects of growth and development
Angiosperms4530Oryza sativaGEND000521GenotypeNext generation sequencing facilitates quantitative analysis of bHLH6 OV, spx4, and wild-type transcriptomes
Angiosperms4530Oryza sativaGEND000522GenotypeNext generation sequencing of wild type and OsMIR393b transcriptomes
Angiosperms4530Oryza sativaGEND000523GenotypeNext generation sequencing facilitates quantitative analysis of ZH11 and ONAC127/ONAC129 transgenic plants transcriptomes
Angiosperms4530Oryza sativaGEND000524Genotype; AnatomyDNA methylation of a 3' cis-element promotes gene activation
Angiosperms4530Oryza sativaGEND000525BioticTranscriptome analysis of the rice response to Magnaporthe oryzae identified core genes involved in immunity
Angiosperms4530Oryza sativaGEND000527DevelopmentTranscriptome analysis reveals photoperiod-associated genes expressed in rice anthers
Angiosperms4530Oryza sativaGEND000528DevelopmentTranscriptome profiling reveals the regulatory role of CSA-mediated photoperiod-dependent male fertility
Angiosperms4530Oryza sativaGEND000530AbioticCo-overexpression of the constitutively active form of OsbZIP46 and ABA-activated protein kinase SAPK6 improves drought and temperature stress resistance in rice
Angiosperms4530Oryza sativaGEND000531DevelopmentDown-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice
Angiosperms4530Oryza sativaGEND000532AbioticGenome-wide screening of drought-responsive long noncoding RNAs in rice
Angiosperms4530Oryza sativaGEND000533DevelopmentSingle-nucleus sequencing deciphers lineage trajectories in rice pistils
Angiosperms4530Oryza sativaGEND000534GenotypeUnique transcriptome and gene expression analysis of rice seedling reveals different cadmium response regulatory mechanisms between Indica and Japonica rice
Angiosperms4530Oryza sativaGEND000535GenotypeActive DNA demethylation regulates plant gamete and zygote genome reprogramming
Angiosperms4530Oryza sativaGEND000536GenotypeA mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage
Angiosperms4530Oryza sativaGEND000537Hormone; AbioticJAZ1 attenuates drought resistance by regulating JA and ABA signaling in rice
Angiosperms4530Oryza sativaGEND000538AbioticGenome-wide identification of SNAC1-targeted genes involved in drought response in rice
Angiosperms4530Oryza sativaGEND000539Biotic; HormoneA viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection
Angiosperms4530Oryza sativaGEND000540Anatomy; DevelopmentTranscriptome profiling of various organs at different developmental stages in rice
Angiosperms4530Oryza sativaGEND000612Biotic; HormoneThe gene expression kinetics reveals a key role of jasmonic acid in rice disease resistance to Magnaporthe
Angiosperms4530Oryza sativaGEND000613AbioticTranscriptome response to safener treatment in rice cell cultures
Angiosperms4530Oryza sativaGEND000614Abiotic; AnatomyOryza sativa ssp. japonica (Kitaake) stressed by cold stress targeted to leaves, roots or the whole plant, and exposed to previous acclimation
Angiosperms4530Oryza sativaGEND000615Abiotic; DevelopmentBulk RNA sequencing data of rice roots protoplasted for 2.5 hours and 3 hours, as well as rice roots grown in gel, non-compacted soil and compacted soil conditions
Angiosperms4530Oryza sativaGEND000616Genotype; AnatomyThe transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions
Angiosperms4530Oryza sativaGEND000617Genotype; AnatomyRNA-seq analysis of TP309, rod1 and ROD1-OE leaves at tillering stage and inflorescence meristem at filling stage
Angiosperms4530Oryza sativaGEND000618Abiotic; Anatomy; GenotypeTranscriptomic responses to submergence in elongating and non-elongating leaves of rice with and without SUB1A
Angiosperms4530Oryza sativaGEND000619DevelopmentStomatal development and gene expression in rice florets
Angiosperms3847Glycine maxGEND000262GenotypeCharacterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans
Angiosperms3847Glycine maxGEND000264GenotypeTranscriptomes of 102 soybean accessions
Angiosperms3847Glycine maxGEND000265GenotypeIdentification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content
Angiosperms3847Glycine maxGEND000266GenotypeGenome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
Angiosperms3847Glycine maxGEND000267DevelopmentTranscription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling
Angiosperms3847Glycine maxGEND000268DevelopmentUsing RNA-Seq to profile soybean seed development from fertilization to maturity
Angiosperms3847Glycine maxGEND000269AnatomyTranscriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean
Angiosperms3847Glycine maxGEND000270BioticRNA-seq analysis of distal gene expression changes during nodulation
Angiosperms3847Glycine maxGEND000271BioticTranscriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum
Angiosperms3847Glycine maxGEND000272BioticTranscriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean
Angiosperms3847Glycine maxGEND000273BioticIdentification of soybean genes differentially regulated in near isogenic lines differing in resistance to aphid infestation
Angiosperms3847Glycine maxGEND000274BioticCharacterization of induced susceptibility effects on soybean- soybean aphid interactions
Angiosperms3847Glycine maxGEND000275AbioticTranscriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency
Angiosperms3847Glycine maxGEND000276AbioticTranscriptomic study of soybean (Glycine max) in response to zinc deficiency
Angiosperms3847Glycine maxGEND000277Biotic; AbioticGenome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules
Angiosperms3847Glycine maxGEND000303GenotypePan-genome of wild and cultivated soybeans
Angiosperms3702Arabidopsis thalianaGEND000313Hormone; AbioticLUH activates JA signaling
Angiosperms3702Arabidopsis thalianaGEND000315GenotypeArabidopsis wild type and knat3knat7
Angiosperms3702Arabidopsis thalianaGEND000322Hormone; DevelopmentTranscriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem
Angiosperms3702Arabidopsis thalianaGEND000323Genotype; AnatomyThe mRNA expression profiles of the hypocotyl and root in WT and hy5 (thale cress)
Angiosperms3702Arabidopsis thalianaGEND000325AbioticTime of day prioritizes the pool of translating mRNAs in response to heat stress
Angiosperms4558Sorghum bicolorGEND000278DevelopmentTranscriptional trajectories of anther development provide candidates for engineering male fertility in sorghum
Angiosperms4558Sorghum bicolorGEND000279DevelopmentDNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor
Angiosperms4558Sorghum bicolorGEND000280Development; HormoneSorghum axillary bud transcriptome response to leaf removal
Angiosperms4558Sorghum bicolorGEND000281AbioticLifecycle transcriptomics of field-droughted sorghum reveals rapid biotic and metabolic responses
Angiosperms4558Sorghum bicolorGEND000282AbioticSorghum nitrogen stress tolerance
Angiosperms3708Brassica napusGEND000312GenotypeTranscriptomic comparison between doule-low and double-high Brassica napus cultivars
Angiosperms90675Camelina sativaGEND000641Abiotic; AnatomyComparative analysis of shoot and root in response to salinity stress in camelina sativa
Angiosperms81985Capsella rubellaGEND000634Genotype; AnatomyImprinted genes in Capsella rubella
Angiosperms4265Cynara cardunculusGEND000658GenotypeCardoon (Cynara cardunculus var. altilis L.) RNA-seq
Angiosperms66656Durio zibethinusGEND000647Genotype; DevelopmentDiscovery of novel genes and pathways through comparative transcriptomics approach to elucidate genes expressed in durian D24 varieties fruit pulp development and ripening
Angiosperms3486Humulus lupulusGEND000650AnatomyNon-floral cascade RNA-seq
Angiosperms34305Lotus japonicusGEND000659BioticEctopic expression of NAC094 induces premature nodule senescence in Lotus japonicus
Angiosperms29780Mangifera indicaGEND000652Biotic; GenotypeRNA-Seq analysis of the spongy tissue disorder in Mangifera indica Cv. Alphonso
Angiosperms4146Olea europaeaGEND000651AnatomyGene expression pattern in olive tree organs (Olea europaea L.)
Angiosperms74649Rosa chinensisGEND000630DevelopmentTranscriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’
Lycophytes88036Selaginella moellendorffiiGEND000636DevelopmentRNA-sequencing analysis of reproduction/meiosis in Selaginella moellendorffiiNA
Lineage Taxonomy ID Species GEN Dataset ID Biological Contexts Dataset Description PPR MORF ORRM OZ
Last update: Sep 2026 (version 2.0)