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Expression Matrices - Plant Editosome Database - CNCB-NGDC
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Expression matrices for editing factor hallmark domain-containing genes.


Lineage Taxonomy ID Species GEN Dataset ID Dataset Description PPR MORF ORRM OZ
Angiosperms4530Oryza sativaGEND000254Variation in transcriptional responses to salt stress in rice
Angiosperms4530Oryza sativaGEND000255RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)
Angiosperms4530Oryza sativaGEND000256Transcriptome profile of rice genotypes IR24 and IRBB67 in interaction with Xanthomonas oryzae pv. oryzae under two temperature regimes
Angiosperms4530Oryza sativaGEND000257Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
Angiosperms4530Oryza sativaGEND000258Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels
Angiosperms4530Oryza sativaGEND000259OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice
Angiosperms4530Oryza sativaGEND000260Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice
Angiosperms4530Oryza sativaGEND000261mRNA sequencing of whole 15 d old Oryza sativa shoots
Angiosperms4530Oryza sativaGEND000286Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery
Angiosperms4530Oryza sativaGEND000287Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
Angiosperms4530Oryza sativaGEND000288Gene expression profiling of the early cadmium response includes abiotic stress signaling pathway in rice
Angiosperms4530Oryza sativaGEND000289Transcriptome profiling in reciprocal hybrids and tetraploids constructed from subspecies japonica and indica of Asian rice (Oryza sativa L.)
Angiosperms4530Oryza sativaGEND000290Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality
Angiosperms4530Oryza sativaGEND000291Rice germline‐specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs
Angiosperms4530Oryza sativaGEND000292Retrogenes in Rice (Oryza sativa L. ssp. japonica) Exhibit Correlated Expression with Their Source Genes
Angiosperms4530Oryza sativaGEND000293Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles
Angiosperms4530Oryza sativaGEND000294Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza Sativa L.)
Angiosperms4530Oryza sativaGEND000295International Rice Genome Sequencing Project
Angiosperms4530Oryza sativaGEND000296Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition
Angiosperms4530Oryza sativaGEND000297Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola
Angiosperms4530Oryza sativaGEND000298Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31
Angiosperms4530Oryza sativaGEND000299Stranded RNA-seq and methylomes for the rice DCL3a RNAi experiment
Angiosperms4530Oryza sativaGEND000300Stranded RNA-seq for rice after 3, 24 and 52 days of Pi stress
Angiosperms4530Oryza sativaGEND000301Rice nucleosome and gene expression
Angiosperms4530Oryza sativaGEND000302Oryza sativa Transcriptome under micronutrient deficiency in root.
Angiosperms4530Oryza sativaGEND000311Dynamic RNA-Seq of rice shoot gravitropism
Angiosperms4530Oryza sativaGEND000316Differential regulation of internode elongation by brassinosteroid
Angiosperms4530Oryza sativaGEND000317RNA-seq of rice 9311 at Taoyuan
Angiosperms4530Oryza sativaGEND000319Genomic basis of rice geographic adaptation to soil nitrogen
Angiosperms4530Oryza sativaGEND000320Combining transcriptome and metabolome analyses of 02428 seedlings after salt and melatonin stress
Angiosperms4530Oryza sativaGEND000321REM20 regulates rice panicle development
Angiosperms4530Oryza sativaGEND000511Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation
Angiosperms4530Oryza sativaGEND000512RNA-seq analysis of different sub-regions of developing grains in rice
Angiosperms4530Oryza sativaGEND000513The RNA-seq analysis of rice roots colonized by the endophytic bacterium Azoarcus olearius BH72 after one-, three- and seven-days post inoculation and after three days of boosted colonization
Angiosperms4530Oryza sativaGEND000514Rice root response atlas
Angiosperms4530Oryza sativaGEND000515The Evening Complex integrates photoperiod signals to control flowering in rice
Angiosperms4530Oryza sativaGEND000516Transcriptome analysis of piperonylic acid-treated, Meloidogyne graminicola-inoculated rice roots
Angiosperms4530Oryza sativaGEND000517A plant-specific splicing factor RS33 regulates abiotic stress responses in rice
Angiosperms4530Oryza sativaGEND000518Transcriptome analysis of piperonylic acid-treated, Meloidogyne graminicola-inoculated rice roots
Angiosperms4530Oryza sativaGEND000519A lamin-like protein OsNMCP1 regulates drought resistance and root growth partially through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice
Angiosperms4530Oryza sativaGEND000520The rice pseudo phosphotransfer proteins are negative regulators of endogenous cytokinin signaling and affect multiple aspects of growth and development
Angiosperms4530Oryza sativaGEND000521Next Generation Sequencing Facilitates Quantitative Analysis of bHLH6 OV, spx4, and wild-type Transcriptomes
Angiosperms4530Oryza sativaGEND000522Next Generation Sequencing of Wild Type and OsMIR393b Transcriptomes
Angiosperms4530Oryza sativaGEND000523Next Generation Sequencing Facilitates Quantitative Analysis of ZH11 and ONAC127/ONAC129 transgenic plants Transcriptomes
Angiosperms4530Oryza sativaGEND000524DNA methylation of a 3' cis-element promotes gene activation
Angiosperms4530Oryza sativaGEND000525Transcriptome analysis of the rice response to Magnaporthe oryzae identified core genes involved in immunity
Angiosperms4530Oryza sativaGEND000527Transcriptome analysis reveals photoperiod-associated genes expressed in rice anthers
Angiosperms4530Oryza sativaGEND000528Transcriptome profiling reveals the regulatory role of CSA-mediated photoperiod-dependent male fertility
Angiosperms4530Oryza sativaGEND000530Co-overexpression of the constitutively active form of OsbZIP46 and ABA-activated protein kinase SAPK6 improves drought and temperature stress resistance in rice
Angiosperms4530Oryza sativaGEND000531Down-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice
Angiosperms4530Oryza sativaGEND000532Genome-wide screening of drought-responsive long noncoding RNAs in rice
Angiosperms4530Oryza sativaGEND000533Single-nucleus sequencing deciphers lineage trajectories in rice pistils [bulk RNA-seq]
Angiosperms4530Oryza sativaGEND000534Unique transcriptome and gene expression analysis of rice seedling reveals different cadmium response regulatory mechanisms between Indica and Japonica rice
Angiosperms4530Oryza sativaGEND000535Active DNA Demethylation Regulates Plant Gamete and Zygote Genome Reprogramming
Angiosperms4530Oryza sativaGEND000536A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage
Angiosperms4530Oryza sativaGEND000537JAZ1 attenuates drought resistance by regulating JA and ABA signaling in rice
Angiosperms4530Oryza sativaGEND000538Genome-wide identification of SNAC1-targeted genes involved in drought response in rice
Angiosperms4530Oryza sativaGEND000539A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection
Angiosperms4530Oryza sativaGEND000540Transcriptome profiling of various organs at different developmental stages in rice
Angiosperms4530Oryza sativaGEND000612The gene expression kinetics reveals a key role of jasmonic acid in rice disease resistance to Magnaporthe
Angiosperms4530Oryza sativaGEND000613Transcriptome response to safener treatment in rice cell cultures
Angiosperms4530Oryza sativaGEND000614Oryza sativa ssp. japonica (Kitaake) stressed by cold stress targeted to leaves, roots or the whole plant, and exposed to previous acclimation
Angiosperms4530Oryza sativaGEND000615Bulk RNA sequencing data of rice roots protoplasted for 2.5 hours and 3 hours, as well as rice roots grown in gel, non-compacted soil and compacted soil conditions
Angiosperms4530Oryza sativaGEND000616The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions [RNA-seq]
Angiosperms4530Oryza sativaGEND000617RNA-seq analysis of TP309, rod1 and ROD1-OE leaves at tillering stage and inflorescence meristem at filling stage
Angiosperms4530Oryza sativaGEND000618Transcriptomic responses to submergence in elongating and non-elongating leaves of rice with and without SUB1A
Angiosperms4530Oryza sativaGEND000619Stomatal Development and Gene Expression in Rice Florets
Angiosperms3847Glycine maxGEND000262Characterizing seed weight related genes through transcriptome analyses of wild and cultivated soybeans
Angiosperms3847Glycine maxGEND000264Transcriptomes of 102 soybean accessions
Angiosperms3847Glycine maxGEND000265Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content
Angiosperms3847Glycine maxGEND000266Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
Angiosperms3847Glycine maxGEND000267Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling
Angiosperms3847Glycine maxGEND000268Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity
Angiosperms3847Glycine maxGEND000269Transcriptome analysis of differentially expressed genes in different pod dehiscence characteristics of soybean
Angiosperms3847Glycine maxGEND000270RNA-seq analysis of distal gene expression changes during nodulation
Angiosperms3847Glycine maxGEND000271Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum
Angiosperms3847Glycine maxGEND000272Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean
Angiosperms3847Glycine maxGEND000273Identification of Soybean Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation
Angiosperms3847Glycine maxGEND000274Characterization of induced susceptibility effects on soybean- soybean aphid interactions
Angiosperms3847Glycine maxGEND000275Transcriptomic study of soybean (Glycine max) leaves in response to short-term phosphorus deficiency
Angiosperms3847Glycine maxGEND000276Transcriptomic study of soybean (Glycine max) in response to zinc deficiency
Angiosperms3847Glycine maxGEND000277Genome wide transcriptome analysis reveals complex regulatory mechanisms underlying phosphate homeostasis in soybean nodules
Angiosperms3847Glycine maxGEND000303Pan-Genome of Wild and Cultivated Soybeans
Angiosperms3702Arabidopsis thalianaGEND000313LUH activates JA signaling
Angiosperms3702Arabidopsis thalianaGEND000315Arabidopsis wild type and knat3knat7
Angiosperms3702Arabidopsis thalianaGEND000322Transcriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem
Angiosperms3702Arabidopsis thalianaGEND000323The mRNA expression profiles of the hypocotyl and root in WT and hy5 (thale cress)
Angiosperms3702Arabidopsis thalianaGEND000325Time of day prioritizes the pool of translating mRNAs in response to heat stress
Angiosperms4558Sorghum bicolorGEND000278Transcriptional trajectories of anther development provide candidates for engineering male fertility in sorghum
Angiosperms4558Sorghum bicolorGEND000279DNA Methylation and Gene Expression Regulation Associated with Vascularization in Sorghum bicolor
Angiosperms4558Sorghum bicolorGEND000280Sorghum axillary bud transcriptome response to leaf removal
Angiosperms4558Sorghum bicolorGEND000281Lifecycle transcriptomics of field-droughted sorghum reveals rapid biotic and metabolic responses
Angiosperms4558Sorghum bicolorGEND000282Sorghum nitrogen stress tolerance
Angiosperms3708Brassica napusGEND000312Transcriptomic comparison between doule-low and double-high Brassica napus cultivars
Angiosperms90675Camelina sativaGEND000641Comparative analysis of shoot and root in response to salinity stress in camelina sativa
Angiosperms81985Capsella rubellaGEND000634Imprinted genes in Capsella rubella
Angiosperms4265Cynara cardunculusGEND000658Cardoon (Cynara cardunculus var. altilis L.) RNA-seq
Angiosperms66656Durio zibethinusGEND000647Discovery of Novel Genes and Pathways through Comparative Transcriptomics Approach to Elucidate Genes Expressed in Durian D24 Varieties Fruit Pulp Development and Ripening
Angiosperms3486Humulus lupulusGEND000650Non-floral Cascade RNA-seq
Angiosperms34305Lotus japonicusGEND000659Ectopic expression of NAC094 induces premature nodule senescence in Lotus japonicus
Angiosperms29780Mangifera indicaGEND000652RNA-Seq analysis of the spongy tissue disorder in Mangifera indica Cv. Alphonso
Angiosperms4146Olea europaeaGEND000651Gene expression pattern in olive tree organs (Olea europaea L.)
Angiosperms74649Rosa chinensisGEND000630Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’
Lycophytes88036Selaginella moellendorffiiGEND000636RNA-Sequencing analysis of reproduction/meiosis in Selaginella moellendorffiiNA
Lineage Taxonomy ID Species GEN Dataset ID Dataset Description PPR MORF ORRM OZ
Last update: Feb 2026 (version 2.0)