MEF19 - Plant Editosome Database

Summary

Editing Factor:	MEF19
Synonym:	MITOCHONDRIAL EDITING FACTOR 19
Description:	Encoding a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing
Protein Family:	PPR
Subclass:	E
Physical Interaction:	NA
Construct Structure:	PLS-E
Gene ID & Species:	AT3G05240 (Arabidopsis thaliana)
Edited Gene(s):	ccmB
Editing Type(s):	C-to-U (6)
Publication(s):	[1] The Analysis of the Editing Defects in the Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins., Plants (Basel, Switzerland), 2020. [PMID=32098170] [2] Multiple PPR protein interactions are involved in the RNA editing system in mitochondria and plastids., Proceedings of the National Academy of Sciences of the United States of America, 2017. [PMID=28761003] [3] Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana., The Journal of biological chemistry, 2010. [PMID=20566637]

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Arabidopsis thaliana

AT3G05240

Mitochondrion

ccmB

566

CDS

NA
EnsemblGenomes (release 39)

NA
BK010421

C-to-U

UCC=>UUC
NA=>NA

S=>F
NA=>NA

Recoding
NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
SALK_131274C	mef19	T-DNA Insertion	T-DNA is inserted in the CDS	Homozygous	No gross disturbance in their growth or development patterns	Leaf	NA	Direct Sequencing of PCR Products	0.00%	Unedited	Absent	20566637
SALK_131274C	mef19	Complementation	Introduction of the Col wild type version of the gene MEF19 into the mutant protoplasts	NA	NA	Protoplast	NA	Direct Sequencing of PCR Products	NA	Medium	Restored	20566637
Col-0	WT	Control	Control	Control	NA	NA	NA	RNA-seq	94.02%	High	None	32098170
Col-0	WT	Control	Control	Control	Normal	Leaf	NA	RT-PCR and calculated with the DNADynamo software (BlueTract	63.00%	High	None	28761003
Col-0	DYW2-GFP-OE1	Generating Arabidopsis plants overexpressing the GFP-tagged DYW2 gene	Col-0 A. thaliana plants were transformed with the 35S::DYW2-GFP plasmids (in pK7WGF2 backbone) by the floral-dip method. Transformed plants were selected based on Kanamycin resistance. Two independen	NA	Slow growth	Leaf	NA	RT-PCR and calculated with the DNADynamo software (BlueTract	13.00%	Poor	Decreased	28761003
Col-0	DYW2-GFP-OE2	Generating Arabidopsis plants overexpressing the GFP-tagged DYW2 gene	Col-0 A. thaliana plants were transformed with the 35S::DYW2-GFP plasmids (in pK7WGF2 backbone) by the floral-dip method. Transformed plants were selected based on Kanamycin resistance. Two independen	NA	Slow growth	Leaf	NA	RT-PCR and calculated with the DNADynamo software (BlueTract	7.00%	Poor	Decreased	28761003