OsPPR6 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: OsPPR6
Synonym: NA
Description: Encodes a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA which is required for chloroplast biogenesis in rice.
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-E1-E2-DYW
Gene ID & Species: LOC_OS05G49920 (Oryza sativa)
Edited Gene(s): ndhB
Editing Type(s): C-to-U (3)
Publication(s): [1] OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice, Plant Molecular Biology, 2017. [PMID=28856519]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Oryza sativa LOC_OS05G49920 Chloroplast ndhB 737 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica rice cultivar Kohishikariosppr6EMS MutantA point mutation at 1103-bp from the start codon of OsPPR6 changes threonine (Thr) to isoleucine (Ile)HeterozygousEarly chloroplast developmental defects leading to albino leaves and seedling deathLeaf3 leaf stageDirect Sequencing of PCR Products30.00%LowDecreased28856519
Japonica rice cultivar KohishikariWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf3 leaf stageDirect Sequencing of PCR ProductsNAHighNone28856519
9-119-11No treatmentNo treatmentNo treatmentNo treatmentLeaf3 leaf stageDirect Sequencing of PCR Products100.00%CompleteNone28856519
Last update: Jul 2021 (version 1.0)