Plant Editosome Database
a curated database of RNA editosome in plants

PPR1 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: PPR1
Synonym: Pentatricopeptide Repeat Protein 1
Description: Under Cd treatments, Pentatricopeptide Repeat Protein 1 (PPR1), the target of miR400, acts as a positive regulator by inducing ROS accumulation; Ppr1 mutation affected the Complex III activity in the electron transport chain and RNA editing of the mitochondrial gene ccmB
Protein Family: PPR
Subclass: P
Construct Structure: P
Gene ID & Species: AT1G06580 (Arabidopsis thaliana)
Edited Gene(s): ccmB
Editing Type(s): C-to-U (39)    U-to-C (3)
Publication(s): [1] Intronic microRNA-directed regulation of mitochondrial reactive oxygen species enhances plant stress tolerance in Arabidopsis., The New phytologist, 2023. [PMID=37547968]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 137 CDS C-to-U UCC=>UUC S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 148 CDS C-to-U CCC=>UCC P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 149 CDS C-to-U CCG=>CUG P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 164 CDS C-to-U CCG=>CUG P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 172 CDS C-to-U CCU=>UCU P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 424 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 428 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 475 CDS C-to-U CCA=>UCA P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 476 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 511 CDS U-to-C UCU=>CCU S=>P Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 512 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 514 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 554 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Arabidopsis thaliana AT1G06580 Mitochondrion ccmB 71 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Columbia (Col-0)WTControlControlNo mutantNormalSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879Cppr1A T-DNA insertion mutantNAHomozygousDecrease in root growthSeedling7-d-oldSequencing RT-PCR productsNANANA37547968
SALK_022879CComp #9ComplementationFor the complementation assay, the region from -2110 to -1 of PPR1 and the PPR1 full-length cDNA were cloned into pBI121. These constructs were introduced into Agrobacterium tumefaciens strain GV3101 HomozygousNASeedling7-d-oldSequencing RT-PCR productsNANANA37547968
Last update: Jul 2021 (version 1.0)