PPR6 - Plant Editosome Database

Editing Factor:	PPR6
Synonym:	OsPPR6
Description:	Encoding a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA which is required for chloroplast biogenesis in rice
Protein Family:	PPR
Subclass:	DYW
Physical Interaction:	NA
Construct Structure:	PLS-E1-E2-DYW
Gene ID & Species:	LOC_OS05G49920 (Oryza sativa)
Edited Gene(s):	ndhB
Editing Type(s):	C-to-U (3)
Publication(s):	[1] OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice., Plant molecular biology, 2017. [PMID=28856519]

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

LOC_OS05G49920

Chloroplast

737

CDS

Rice Genome Annotation Project (http://rice.uga.edu/)

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Japonica rice cultivar Kohishikari	osppr6	EMS Mutant	A point mutation at 1103-bp from the start codon of OsPPR6 changes threonine (Thr) to isoleucine (Ile)	Heterozygous	Early chloroplast developmental defects leading to albino leaves and seedling death	Leaf	3 leaf stage	Direct Sequencing of PCR Products	30.00%	Low	Decreased	28856519
Japonica rice cultivar Kohishikari	WT	Control	Control	Control	Normal	Leaf	3 leaf stage	Direct Sequencing of PCR Products	NA	High	None	28856519
93-11	93-11	Control	Control	Control	Normal	Leaf	3 leaf stage	Direct Sequencing of PCR Products	100.00%	Complete	None	28856519