Plant Editosome Database
a curated database of RNA editosome in plants

PpPPR_71 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: PpPPR_71
Synonym: Phypa_181369
Description: Encodes an RNA-binding protein that acts as a site recognition factor required for RNA editing of the ccmFc transcript.
Protein Family: PPR
Subclass: DYW
Construct Structure: DYW, PLS-DYW
Gene ID & Species: PP1S48_253V6 (Physcomitrella patens)
Edited Gene(s): ccmFC
Editing Type(s): C-to-U (5)
Publication(s): [1] Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria, Plant Cell Physiology, 2013. [PMID=24058147]
[2] The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript, The Plant Journal, 2010. [PMID=20163555]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Physcomitrella patens PP1S48_253V6 Mitochondrion ccmFC 122 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NA6-11Polyethylene Glycolmediated TransformationNAKnockoutSignificantly poor growth of the protonemataProtonema4 daysDirect Sequencing of PCR Products0.00%UneditedAbsent20163555
NA7-9Biolistic TransformationNAKnockoutSignificantly poor growth of the protonemataProtonema4 daysDirect Sequencing of PCR Products0.00%UneditedAbsent20163555
NAWTNo treatmentNo treatmentNo treatmentNo treatmentProtonema4 daysDirect Sequencing of PCR Products82.40%HighNone20163555
NAWTNo treatmentNo treatmentNo treatmentNo treatmentProtonema4 daysDirect Sequencing of PCR Products80.00%HighNone24058147
NAΔ71-6-11Polyethylene Glycolmediated TransformationNAKnockoutSevere growth retardation of the moss protonemataProtonema4 daysDirect Sequencing of PCR Products0.00%UneditedAbsent24058147
Last update: Jul 2021 (version 1.0)