PpPPR_79 - Plant Editosome Database - BIG Data Center
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- PpPPR_79
Summary
| Editing Factor: |
PpPPR_79 |
| Synonym: |
Phypa_192787 |
| Description: |
Encoding a PPR protein involved in RNA editing at the nad5-1 (nad5-C598) site in the mitochondrial transcripts |
| Protein Family: |
PPR
|
| Subclass: |
DYW
|
| Construct Structure: |
PLS-E/E+-DYW
|
| Gene ID & Species: |
PP1S186_64V6 (Physcomitrium patens)
|
| Edited Gene(s): |
nad5
|
| Editing Type(s): |
C-to-U (2)
|
| Publication(s): |
[1] The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria., FEBS letters, 2011. [PMID=21708151]
|
Editing Details
| Species |
Gene ID |
Organelle |
Edited Gene |
Position |
Region |
Editing Type |
Codon |
Amino Acid |
Molecular Effect |
Experiment Details |
| Physcomitrium patens |
PP1S186_64V6 |
Mitochondrion |
nad5
|
598 |
CDS |
C-to-U |
CGU=>UGU |
R=>C |
Recoding |
|
Experiment Details
| Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
| NA | △79 | Gene Cassette | hpt gene cassette | Knockout | Severe growth retardation of the protonemata | Protonema | 3 days | Direct Sequencing of PCR Products | 0.00% | Unedited | Absent | 21708151 | | NA | WT | Control | Control | Control | Normal | Protonema | 3 days | Direct Sequencing of PCR Products | 100.00% | Complete | None | 21708151 |
|
Last update: Jul 2021
(version 1.0)