Plant Editosome Database
a curated database of RNA editosome in plants

SMK6 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: SMK6
Synonym:
Description:
Protein Family: PPR
Subclass: E
Construct Structure: PLS-E-E+
Gene ID & Species: At2G13600 (Arabidopsis thaliana)
GRMZM2G010046 (Zea mays)
Edited Gene(s): nad1    nad4L    nad7    mttB
Editing Type(s): C-to-U (30)
Publication(s): [1] SMK6 mediates the C-to-U editing at multiple sites in maize mitochondria, Journal of Plant Physiology, 2019. [PMID=31234031]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana At2G13600 Mitochondrion mttB 145 CDS C-to-U CUC=>UUC P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0Col-0No treatmentNo treatmentNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NALowChanged31234031
SALK_021900Cslo2No treatmentNo treatmentNo treatmentSlow growthKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-4OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-5OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-8OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NALowChanged31234031
Arabidopsis thaliana At2G13600 Mitochondrion mttB 146 CDS C-to-U UCG=>CCG S=>P Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0Col-0No treatmentNo treatmentNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAMediumChanged31234031
SALK_021900Cslo2No treatmentNo treatmentNo treatmentSlow growthKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-4OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAMediumChanged31234031
SALK_021900CSmk6-OX-5OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAHighChanged31234031
SALK_021900CSmk6-OX-8OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NALowChanged31234031
Arabidopsis thaliana At2G13600 Mitochondrion nad4L 110 CDS C-to-U CAA=>UAA S=>S/L Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0Col-0No treatmentNo treatmentNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAHighChanged31234031
SALK_021900Cslo2No treatmentNo treatmentNo treatmentSlow growthKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-4OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAHighChanged31234031
SALK_021900CSmk6-OX-5OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAMediumChanged31234031
SALK_021900CSmk6-OX-8OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAMediumChanged31234031
Arabidopsis thaliana At2G13600 Mitochondrion nad7 739 CDS C-to-U CUU=>UUU P=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0Col-0No treatmentNo treatmentNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAHighChanged31234031
SALK_021900Cslo2No treatmentNo treatmentNo treatmentSlow growthKernels11 DAPDirect Sequencing of PCR Products NAUneditedChanged31234031
SALK_021900CSmk6-OX-4OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAHighChanged31234031
SALK_021900CSmk6-OX-5OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NAMediumChanged31234031
SALK_021900CSmk6-OX-8OverexpressionOverexpressionNo treatmentGrow wellKernels11 DAPDirect Sequencing of PCR Products NALowChanged31234031
Zea mays GRMZM2G010046 Mitochondrion mttB 138 CDS C-to-U CUC=>UUC P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAsmk6No treatmentNo treatmentNo treatmentNAKernels11 DAPDirect Sequencing of PCR Products NALowNone31234031
UniformMusmk6Mu transposon insertion,Mu transposon insertion,