NGSPipe Next generation sequencing pipeline

Introduction

Pipeline for next generation sequencing analysis.

  1. raw read quality control
  2. read alignment 
  3. mutation detection

Publications

No Publication Information

Credits

  1. PENG JIA pengjia@stu.xjtu.edu.cn
    Investigator

    Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, China

Community Ratings

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pen***a@stu.xjtu.edu.cn (May 31, 2021)
w_a***d@163.com (June 26, 2023)
Summary
AccessionBT007161
Tool TypePipeline & Protocol
CategoryRead alignment, SNP detection, CNV detection, Structural variant detection
PlatformsLinux/Unix
TechnologiesBASH
User InterfaceTerminal Command Line
Input DataBAM, FASTA, FASTQ
Latest Release0.1.0 (May 31, 2021)
Download Count2416
Country/RegionChina
Submitted ByPENG JIA
Fundings

2018YFC0910400