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  • PGAP pan-genomes analysis pipeline

    Categories Software pipelinesTool Type: Pipeline & ProtocolTechnologies: PerlDownload Count: 4149
  • GAAP Genome-organization-framework Assisted Assembly Pipeline

    Categories Genome assembly dataTool Type: Pipeline & ProtocolTechnologies: Python2Download Count: 2769
  • BS-RNA An efficient mapping and annotation tool for RNA Bisulfite Sequencing data

    Categories RNA methylation predictionTool Type: Pipeline & ProtocolTechnologies: Perl, Python2Download Count: 4176
  • WBSA Web Service for Bisulfite Sequencing Data Analysis

    Categories DNA methylationTool Type: Pipeline & ProtocolTechnologies: Perl, R
  • Hyper_editing scripts Hyper_editing scripts for detection of hyper editing in RNA-Seq datasets

    Categories RNA editingTool Type: Pipeline & ProtocolTechnologies: BASH, PerlDownload Count: 2551
  • STC-Seq HLA-typing and analysis pipeline

    Categories Other toolsTool Type: Pipeline & ProtocolTechnologies: C++, RDownload Count: 1247
  • SARS-CoV2-iSNV SARS-CoV2 iSNV identification

    Categories SNP detectionTool Type: Pipeline & ProtocolTechnologies: BASHDownload Count: 659
  • Asymptomatic transmission of SARS-CoV-2 Genomic analysis of asymptomatic transmission

    Categories Other toolsTool Type: Pipeline & ProtocolTechnologies: BASH, PerlDownload Count: 1279
  • CeNet Omnibus An R/Shiny application to the construction and analysis of competing endogenous RNA network

    Categories Competing endogenous RNATool Type: Pipeline & ProtocolTechnologies: RDownload Count: 810
  • NGSPipe Next generation sequencing pipeline

    Categories Read alignment, SNP detection, CNV detection, Structural variant detectionTool Type: Pipeline & ProtocolTechnologies: BASHDownload Count: 2416
  • FALCON2 web interface for automated high-quality protein structure prediction

    Categories 3D structure predictionTool Type: Pipeline & ProtocolTechnologies: BASH, GPU, Python3
  • 数字病理图像智能预测免疫组化软件(IHCPred) The WIFPS was built on WSIs for improving the subtyping of lung cancer from surgical resection and biopsy specimens, which consisted of one binary histological classification model (HCM) to recognize tumor versus normal and one immunohistochemical feature prediction model (IPM) to predict IHC expression status directly from WSIs.

    Tool Type: Pipeline & ProtocolTechnologies: Python3Download Count: 34
  • 一种获取外周血基因模型训练数据的方法及装置 rankDetect 是一种基于血液转录组用于乳腺癌早期检测的工具。

    Tool Type: Pipeline & ProtocolTechnologies: Python3Download Count: 1
  • SNP Calling & ChIP-Seq analysis pipeline genome analysis pipeline

    Categories SNP detection, De novo ChIP-seq analysisTool Type: Pipeline & ProtocolTechnologies: BASH
  • RNA工作流 转录组工作流

    Tool Type: Pipeline & ProtocolTechnologies: BASH, R
  • Phylogenetic tree Phylogenetic tree for klebsiella pneumoniae

    Categories SNP detection, Phylogenetic tree visualizationTool Type: Pipeline & ProtocolTechnologies: Perl
  • TripletGO Gene Function Prediction

    Categories Gene predictionTool Type: Pipeline & ProtocolTechnologies: Python3Download Count: 894
  • GREPore-seq A Robust Workflow to Detect Changes after Gene Editing through Long-range PCR and Nanopore Sequencing

    Categories DemultiplexingTool Type: Pipeline & ProtocolTechnologies: Python3
  • Gene prediction Homology-based gene prediction

    Categories Other toolsTool Type: Pipeline & ProtocolTechnologies: BASH
  • Genome analyses protocols Genome analysis protocols for Flying Squids

    Categories Other toolsTool Type: Pipeline & ProtocolTechnologies: BASHDownload Count: 5576
  • MRDN Codes for MicroRNA-based Disease Network (MRDN) Analysis

    Tool Type: Pipeline & ProtocolTechnologies: Python3, RDownload Count: 3445
  • Mining gene (copA-like) This procedure was developed to mine the natural diversity of novel CopA proteins from eDNA. It also can be applied for mining other proteins.

    Categories Gene predictionTool Type: Pipeline & ProtocolTechnologies: BASHDownload Count: 813
  • IVF_Mosaic_Embryo_Transfer Custom code for IVF project.

    Categories Somatic CNA detectionTool Type: Pipeline & ProtocolTechnologies: BASH, RDownload Count: 3960
  • L1_analysis_piepline A collection of scripts for L1 analysis

    Categories Transposon detectionTool Type: Pipeline & ProtocolTechnologies: BASH, Perl, RDownload Count: 17
  • Integration of Multi-omics Approach Reveals Circular RNAs Profile and Their Response to Hormone in Moso Bamboo (Phyllostachys edulis) Integration of Multi-omics Approach Reveals Circular RNAs Profile and Their Response to Hormone in Moso Bamboo (Phyllostachys edulis)

    Categories Alternative splicing, Circular RNA detection, PipelinesTool Type: Pipeline & ProtocolTechnologies: BASH
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