CIRI-long circular RNA identifier using long-read sequencing data
Manual
Installation
Dependency
-
gcc 4.8+
orclang 3.4+
andcmake 3.2+
is needed -
Only python3 is supported
-
CIRI-long requires pysam lib, which need executable binary and header of zlib, bzip2, xz, please refer to documentation of pysam for installation instructions
-
all python dependencies are listed in requirements.txt
-
samtools
version1.9
or higher -
python binding of minimap2
Install CIRI-long from source code
Installation under virtualenv
is highly recommended. You can simply clone the whole repository, then use make
to start a complete installation
git clone https://github.com/bioinfo-biols/CIRI-long.git CIRI-long
cd CIRI-long
# Create virtual environment
python3 -m venv venv
# Activate virtualenv
source ./venv/bin/activate
# Install CIRI-long
make
# Test for installation
make test
The package should take less than 1 min to install on a normal computer.
Install CIRI-long using pip
pip install CIRI-long